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Improved maize reference genome with single molecule technologies
inping Jiao, Paul Peluso, Jinghua Shi, Tiffany Liang, Michelle C. Stitzer, Bo Wang, Michael S. Campbell, Joshua C. Stein, Xuehong Wei, Chen-Shan Chin, Katherine Guill, Michael Regulski, Sunita Kumari, Andrew Olson, Jonathan Gent, Kevin L. Schneider, Thomas K. Wolfgruber, , Plant Cell , 2017
Shell
Free
Universal rule for the symmetric division of plant cells
Sébastien Besson and Jacques Dumais , Plant Cell , 2011
Matlab
Free
Hormone Distribution and Transcriptome Profiles in Bamboo Shoots Provide Insights on Bamboo Stem Emergence and Growth
Rico Gamuyao, Keisuke Nagai, Madoka Ayano, Yoshinao Mori, Anzu Minami, Mikiko Kojima, Takamasa Suzuki, Hitoshi Sakakibara, Tetsuya Higashiyama, Motoyuki Ashikari , Plant Cell , 2017
R
Free
MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis
Alexandra Plotnikova, Max J. Kellner, Michael A. Schon, Magdalena Mosiolek, Michael D. Nodine , Plant Cell , 2019
Python
Free
High-Throughput Genotyping of Green Algal Mutants Reveals Random Distribution of Mutagenic Insertion Sites and Endonucleolytic Cleavage of Transforming DNA
Ru Zhang, Weronika Patena, Ute Armbruster, Spencer S. Gang, Sean R. Blum, Martin C. Jonikas , Plant Cell , 2014
Python
Free
Previsual symptoms of Xylella fastidiosa infection revealed in spectral plant-trait alterations
P. J. Zarco-Tejada, C. Camino, P. S. A. Beck, R. Calderon, A. Hornero, R. Hernández-Clemente, T. Kattenborn, M. Montes-Borrego, L. Susca, M. Morelli, V. Gonzalez-Dugo, P. R. J. North, B. B. Landa, D. Boscia, M. Saponari & J. A. Navas-Cortes , Nature Plants , 2018
R
Free
Dynamic thylakoid stacking regulates the balance between linear and cyclic photosynthetic electron transfer
William H. J. Wood, Craig MacGregor-Chatwin, Samuel F. H. Barnett, Guy E. Mayneord, Xia Huang, Jamie K. Hobbs, C. Neil Hunter & Matthew P. Johnson , Nature Plants , 2018
Python
Free
Quantifying soil moisture impacts on light use efficiency across biomes
Benjamin D. Stocker, Jakob Zscheischler, Trevor F. Keenan, I. Colin Prentice, Josep Peñuelas, Sonia I. Seneviratne , New Phytologist , 2018
R
Free
Genomic landscape of the global oak phylogeny
Andrew L. Hipp, Paul S. Manos, Marlene Hahn, Michael Avishai, Cathérine Bodénès, Jeannine Cavender-Bares, Andrew Crowl, Min Deng, Thomas Denk, Sorel Fitz-Gibbon, Oliver Gailing, M. Socorro González-Elizondo, Antonio González-Rodríguez, eGuido W. Grimm, Xiao-Long Jiang, Antoine Kremer, Isabelle Lesur, John D. McVay, Christophe Plomion, Hernando Rodríguez-Correa, Ernst-Detlef Schulze, Marco C. Simeone, Victoria L. Sork, Susana Valencia-Avalos , New Phytologist , 2019
R
Free
Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity
Andrew L. Hipp, Paul S. Manos, Antonio González-Rodríguez, Marlene Hahn, Matthew Kaproth, John D. McVay, Susana Valencia Avalos, Jeannine Cavender-Bares , New Phytologist , 2017
R
Free
Pleistocene glacial cycles drive isolation, gene flow and speciation in the high-elevation Andes
Bruno Nevado, Natalia Contreras-Ortiz, Colin Hughes, Dmitry A. Filatov , New Phytologist , 1111
Python
Free
Increased aridity drives post-fire recovery of Mediterranean forests towards open shrublands
Mara Baudena, Victor M. Santana, M. Jaime Baeza, Susana Bautista, Maarten B. Eppinga, Lia Hemerik, Angeles Garcia Mayor, Francisco Rodriguez, Alejandro Valdecantos, V. Ramon Vallejo , New Phytologist , 2019
Fortran
Free
Strong divergent selection at multiple loci in two closely related species of ragworts adapted to high and low elevations on Mount Etna
Edgar L. Y. Wong, Bruno Nevado, Owen G. Osborne, Alexander S. T. Papadopulos, Jon R. Bridle, Simon J. Hiscock, Dmitry A. Filatov , New Phytologist , 2019
Python
Free
Biogeochemical impacts of wildfires over four millennia in a Rocky Mountain subalpine watershed.
Dunnette, P.V., P.E. Higuera, K.K. McLauchlan, K.M. Derr, C.E. Briles, and M.H. Keefe , New Phytologist , 2014
Matlab
Free
Response of Macrophyte Traits to Herbivory and Neighboring Species: Integration of the Functional Trait Framework in the Context of Ecological Invasions
Lisa Thouvenot, Benoit Gauzens, Jacques Haury, Gabreielle Thiébaut , Frontiers in Plant Science , 2019
R
Free
Light Modulates Ethylene Synthesis, Signaling, and Downstream Transcriptional Networks to Control Plant Development
Alexandria F. Harkey, Gyeong Mee Yoon, Dong Hye Seo, Alison DeLong, Gloria K. Munday , Frontiers in Plant Science , 2019
HTML
Free
Parental Expression Variation of Small RNAs Is Negatively Correlated with Grain Yield Heterosis in a Maize Breeding Population
Felix Seifert, Alexander Thiemann, Robert Grant-Downton, Susanne Edelmann, Dominika Rybka, Tobias A. Schrag, Matthias Frisch, Hugh G. Dickinson, Albrecht E. Melchinger, Stefan Scholten , Frontiers in Plant Science , 2019
Java
Free
Plant community assembly along a natural metal gradient in central Africa: Functional and phylogenetic approach
Guillaume Delhaye, Olivier J. Hardy, Maxime Séleck, Edouard Ilunga wa Ilunga, Grégory Mahy, Pierre Meerts , Journal of Vegetation Science , 2019
R
Free
A trade-off between primary and secondary seed dispersal by wind
Jinlei Zhu, Minghu Liu, Zhiming Xin, Zhimin Liu & Frank M. Schurr , Plant Ecology , 2019
R
Free
Plastid phylogenomic analysis of green plants: A billion years of evolutionary history
Matthew A. Gitzendanner, Pamela S. Soltis, Gane K.-S. Wong, Brad R. Ruhfel, Douglas E. Soltis , Journal of Botany , 2018
Perl
Free
ammistability: R package for ranking genotypes based on stability parameters derived from AMMI model
B.C Ajay, J. Aravind, R. Abdul Fiyaz , Indian Journal of Genetics and Plant Breeding , 2018
R
Free
Combined Landsat and L-Band SAR Data Improves Land Cover Classification and Change Detection in Dynamic Tropical Landscapes
Jose Don T. De Alban, Grant M. Connette, Patrick Oswald, Edward L. Webb , Remote Sensing of Environment , 2018
JavaScript
Free
Fmask 4.0: Improved cloud and cloud shadow detection in Landsats 4–8 and Sentinel-2 imagery
Shi Qiu, Zhe Zhu, Binbin He , Remote Sensing of Environment , 2019
Python
Free
Characterizing Forest Change Using Community-Based Monitoring Data and Landsat Time Series
Ben DeVries , Arun Kumar Pratihast, Jan Verbesselt, Lammert Kooistra, Martin Herold , Remote Sensing of Environment , 2016
R
Free
Integrating Analytical Frameworks to Investigate Land-Cover Regime Shifts in Dynamic Landscapes
Jose Don T. De Alban, Graham W. Prescott, Kevin M. Woods, Johanness Jamaludin, Kyaw Thinn Latt, Cheng Ling Lim, Aye Chan Maung, Edward L. Webb , Remote Sensing of Environment , 2019
R
Free
Accounting for non-stationary variance in geostatistical mapping of soil properties
Alexandre M.J-C Wadoux, Dick J. Brus, Gerard B.M Heuvelink , Geoderma , 2018
R
Free
Comparison of Terrain Indices and Landform Classification Procedures in Low-Relief Agricultural Fields
Derek A. Evans, Karl W. J. Williard, Jon E. Schoonover , Geoderma , 2016
Python
Free
A simple plasticity theory for frictional cohesionless soils
Jean H.Prevost , Soil Dynamics and Earthquake Engineering , 1985
C++
Free
A ground motion selection algorithm based on the generalized conditional intensity measure approach
Brendon A. Bradley , Soil Dynamics and Earthquake Engineering , 2012
JavaScript
Free
Reconstructing disturbance zones ahead of the tunnel face by elastic waveform inversion supported by a parametric level-set representation
Luan T. Nguyen, Tamara Nestorovic , Soil Dynamics and Earthquake Engineering , 2018
Matlab
Free
On the Seismic Fragility Assessment of Concrete Gravity Dams in Eastern Canada
Rocio Segura, Carl Bernier, Ricardo Monteiro , Soil Dynamics and Earthquake Engineering , 2019
Matlab
Free
Random Forest as a generic framework for predictive modeling of spatial and spatio-temporal variables
Tomislav Hengl, Madlene Nassbaum, Marvin N. Wright, Gerard B.M. Heuvelink, Benedikt Gräler , European Journal of Soil Science , 2018
R
Free
Soil Property and Class Maps of the Conterminous US at 100 meter Spatial Resolution based on a Compilation of National Soil Point Observations and Machine Learning
Amanda Ramcharan, Tomislav Hengl, Travis Nauman, Colby Brungard, Sharon Waltman, Skye Wills, James Thompson , Soil Science Society of America Journal , 2018
R
Free
A Closed-form Equation for Predicting the Hydraulic Conductivity of Unsaturated Soils
M. Th. van Genuchten , Soil Science Society of America Journal , 1980
Python
Free
Digital Soil Mapping and Modeling at Continental Scales: Finding Solutions for Global Issues
S. Grunwald, J. A. Thompson, J. L. Boettinger , Soil Science Society of America Journal , 2011
R
Free
The Water Availability Tool for Environmental Resources (WATER): A Water-Budget Modeling Approach for Managing Water-Supply Resources in Kentucky—Phase I: Data Processing, Model Development, and Application to Non-Karst Areas
Tanja N. Williamson, Kenneth R. Odom, Jeremy K. Newson, Aimee C. Downs, Hugh L. Nelson Jr., Peter J. Cinotto, and Mark A. Ayers , Soil Science Society of America Journal , 2009
Python
Free
A Bayesian Method for Incorporating Self-Similarity Into Earthquake Slip Inversions
R.M J. Amey, A..Hooper, R.J. Walters , Solid Earth , 2018
MATLAB
Free
Complex Near-Surface Rheology Inferred From the Response of Greater Tokyo to Strong Ground Motions
Loïc Viens, Marine A. Denolle, Naoshi Hirata, Shigeki Nakagawa , Solid Earth , 2018
Python
Free
Primary and Secondary Red Bed Magnetization Constrained by Fluvial Intraclasts
Nicholas L. Swanson-Hysell, Luke M. Fairchild, Sarah P. Slotznick , Solid Earth , 2019
Jupyter Notebook
Free
Moment of truth for the Cerrado hotspot
Bernardo B. N. Strassburg et. al. , Ecology and Evolution , 2020
Mathematica
Free
MetSim: A Python package for estimation and disaggregation of meteorological data
Andrew R. Bennett, Joseph J. Hamman, Bart Nijssen , Canadian Journal of Forest Research , 2020
Python
Free

Improved maize reference genome with single molecule technologies

Universal rule for the symmetric division of plant cells

Hormone Distribution and Transcriptome Profiles in Bamboo Shoots Provide Insights on Bamboo Stem Emergence and Growth

MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis

High-Throughput Genotyping of Green Algal Mutants Reveals Random Distribution of Mutagenic Insertion Sites and Endonucleolytic Cleavage of Transforming DNA

Previsual symptoms of Xylella fastidiosa infection revealed in spectral plant-trait alterations

Dynamic thylakoid stacking regulates the balance between linear and cyclic photosynthetic electron transfer

Quantifying soil moisture impacts on light use efficiency across biomes

Genomic landscape of the global oak phylogeny

Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity

Pleistocene glacial cycles drive isolation, gene flow and speciation in the high-elevation Andes

Increased aridity drives post-fire recovery of Mediterranean forests towards open shrublands

Strong divergent selection at multiple loci in two closely related species of ragworts adapted to high and low elevations on Mount Etna

Biogeochemical impacts of wildfires over four millennia in a Rocky Mountain subalpine watershed.

Response of Macrophyte Traits to Herbivory and Neighboring Species: Integration of the Functional Trait Framework in the Context of Ecological Invasions

Light Modulates Ethylene Synthesis, Signaling, and Downstream Transcriptional Networks to Control Plant Development

Parental Expression Variation of Small RNAs Is Negatively Correlated with Grain Yield Heterosis in a Maize Breeding Population

Plant community assembly along a natural metal gradient in central Africa: Functional and phylogenetic approach

A trade-off between primary and secondary seed dispersal by wind

Plastid phylogenomic analysis of green plants: A billion years of evolutionary history

ammistability: R package for ranking genotypes based on stability parameters derived from AMMI model

Combined Landsat and L-Band SAR Data Improves Land Cover Classification and Change Detection in Dynamic Tropical Landscapes

Fmask 4.0: Improved cloud and cloud shadow detection in Landsats 4–8 and Sentinel-2 imagery

Characterizing Forest Change Using Community-Based Monitoring Data and Landsat Time Series

Integrating Analytical Frameworks to Investigate Land-Cover Regime Shifts in Dynamic Landscapes

Accounting for non-stationary variance in geostatistical mapping of soil properties

Comparison of Terrain Indices and Landform Classification Procedures in Low-Relief Agricultural Fields

A simple plasticity theory for frictional cohesionless soils

A ground motion selection algorithm based on the generalized conditional intensity measure approach

Reconstructing disturbance zones ahead of the tunnel face by elastic waveform inversion supported by a parametric level-set representation

On the Seismic Fragility Assessment of Concrete Gravity Dams in Eastern Canada

Random Forest as a generic framework for predictive modeling of spatial and spatio-temporal variables

Soil Property and Class Maps of the Conterminous US at 100 meter Spatial Resolution based on a Compilation of National Soil Point Observations and Machine Learning

A Closed-form Equation for Predicting the Hydraulic Conductivity of Unsaturated Soils

Digital Soil Mapping and Modeling at Continental Scales: Finding Solutions for Global Issues

The Water Availability Tool for Environmental Resources (WATER): A Water-Budget Modeling Approach for Managing Water-Supply Resources in Kentucky—Phase I: Data Processing, Model Development, and Application to Non-Karst Areas

A Bayesian Method for Incorporating Self-Similarity Into Earthquake Slip Inversions

Complex Near-Surface Rheology Inferred From the Response of Greater Tokyo to Strong Ground Motions

Primary and Secondary Red Bed Magnetization Constrained by Fluvial Intraclasts

Moment of truth for the Cerrado hotspot

MetSim: A Python package for estimation and disaggregation of meteorological data