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Science NestCategoriesAquatic Science
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Title Title
Date Date
  • Network structure and biodiversity loss in food webs: robustness increases with connectance

    Jennifer A. Dunne, Richard J. Williams, Neo D. Martinez , Marine Ecology - Progress Series ,  2003
    R

    Free

  • The Food Web of Potter Cove (Antarctica): complexity, structure and function

    Tomás I. Marina, Vanesa Salinas, Georgina Cordone, Gabriela Campana, Eugenia Moreira, Dolores Deregibus, Luciana Torre, Ricardo Sahade, Marcos Tatián, Esteban Barrera Oro, Marleen De Troch, Santiago Doyle, María Liliana Quartino, Leonardo A. Saravia, Fernando R. Momo , Estuarine, Coastal and Shelf Science ,  2017
    R

    Free

  • FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

    Nhu H. Nguyen, Zewei Song, Scott T. Bates, Sara Branco, Leho Tedersoo, Jon Menke, Jonathan S. Schilling, Peter G. Kennedy , Deep-Sea Research Part I: Oceanographic Research Papers ,  2015
    Python

    Free

  • Recruit symbiosis establishment and Symbiodiniaceae composition influenced by adult corals and reef sediment

    A. Ali, N. G. Kriefall, L. E. Emery, C. D. Kenkel, M. V. Matz, S. W. Davies , Coral Reefs ,  2019
    R

    Free

  • Accounting for variable recruitment and fishing mortality in length-based stock assessments for data-limited fisheries

    Merrill B. Rudd, James T. Thorson , Canadian Journal of Fisheries and Aquatic Sciences ,  2017
    R

    Free

  • Spatial semiparametric models improve estimates of species abundance and distribution

    Andrew Olaf Shelton, James T. Thorson, Eric J. Ward, Blake E. Feist , ICES Journal of Marine Science ,  2014
    R

    Free

  • Spatial semiparametric models improve estimates of species abundance and distribution

    Andrew Olaf Shelton, James T. Thorson, Eric J. Ward, Blake E. Feist , Canadian Journal of Fisheries and Aquatic Sciences ,  2014
    R

    Free

  • Joint dynamic species distribution models: a tool for community ordination and spatiotemporal monitoring

    James T. Thorson, James N. Ianelli, Elise A. Larsen, Leslie Ries, Mark D. Scheuerell, Cody Szuwalski, Elise F. Zipkin , Canadian Journal of Fisheries and Aquatic Sciences ,  2016
    C++

    Free

  • Improving estimates of population status and trend with superensemble models

    Sean C Anderson, Andrew B Cooper, Olaf P Jensen, Cóilín Minto, James T Thorson, Jessica C Walsh, Jamie Afflerbach, Mark Dickey-Collas, Kristin M Kleisner, Catherine Longo, Giacomo Chato Osio, Daniel Ovando, Iago Mosqueira, Andrew A Rosenberg, Elizabeth R Selig , Canadian Journal of Fisheries and Aquatic Sciences ,  2017
    R

    Free

  • Black swans in space: modelling spatiotemporal processes with extremes

    Sean C. Anderson, Eric J. Ward , Canadian Journal of Fisheries and Aquatic Sciences ,  2018
    C++

    Free

  • A multi-year hierarchical Bayesian mark-recapture model using recurring salmonid behavior to account for sparse or missing data

    Bryce N. Oldemeyer, Timothy Copeland, Brian P. Kennedy , Canadian Journal of Fisheries and Aquatic Sciences ,  2018
    R

    Free

  • Validation of a hidden Markov model for the geolocation of Atlantic cod

    Chang Liu, Geoffrey W. Cowles, Douglas R. Zemeckis, Steven X. Cadrin, Micah J. Dean , Canadian Journal of Fisheries and Aquatic Sciences ,  2017
    Matlab

    Free

  • Smoothing Population Size Estimates for Time-Stratified Mark-Recapture Experiments Using Bayesian P-Splines

    Simon J. Bonner, Carl J. Schwarz , Canadian Journal of Fisheries and Aquatic Sciences ,  2011
    R

    Free

  • Spatial delay-difference models for estimating spatiotemporal variation in juvenile production and population abundance

    James T. Thorson, James N. Ianelli, Stephan B. Munch, Kotaro Ono, Paul D. Spencer , Canadian Journal of Fisheries and Aquatic Sciences ,  2015
    C++

    Free

  • Nonstationary effects of ocean temperature on Pacific salmon productivity

    Michael A. Litzow, Lorenzo Ciannelli, Curry J. Cunningham, Bethany Johnson, Patricia Puerta , Canadian Journal of Fisheries and Aquatic Sciences ,  2019
    R

    Free

  • No-take marine reserves can enhance population persistence and support the fishery of abalone

    Marisa Rossetto, Fiorenza Micheli, Andrea Saenz-Arroyo, Jose Antonio Espinoza Montes, Giulio Alessandro De Leo , Canadian Journal of Fisheries and Aquatic Sciences ,  2015
    R

    Free

  • Determination of fish movement patterns from tag recoveries using maximum likelihood estimators

    Ray Hilborn , Canadian Journal of Fisheries and Aquatic Sciences ,  2008
    R

    Free

  • Accounting for variable recruitment and fishing mortality in length-based stock assessments for data-limited fisheries

    Merrill B. Rudd, James T. Thorson , Canadian Journal of Fisheries and Aquatic Sciences ,  2017
    R

    Free

  • Empirical, spatially explicit natural mortality and movement rate estimates for the threatened Gulf sturgeon (Acipenser oxyrinchus desotoi)

    Merrill B. Rudd, Robert N.M. Ahrens, William E. Pine, Stephania K. Bolden , Canadian Journal of Fisheries and Aquatic Sciences ,  2014
    R

    Free

  • An improved method for predicting the accuracy of genetic stock identification

    Eric C. Anderson, Robin S. Waples, Steven T. Kalinowski , Canadian Journal of Fisheries and Aquatic Sciences ,  2008
    C

    Free

  • An improved method for predicting the accuracy of genetic stock identification

    Eric C. Anderson, Robin S. Waples, Steven T. Kalinowski , Transactions of the American Fisheries Society ,  2008
    C

    Free

  • Detecting regime shifts in fish stock dynamics

    Tommi Perälä, Anna Kuparinen , Canadian Journal of Fisheries and Aquatic Sciences ,  2015
    C++

    Free

  • Managing mixed-stock fisheries: genotyping multi-SNP haplotypes increases power for genetic stock identification

    Garrett J. McKinney, James E. Seeb, Lisa W. Seeb , Canadian Journal of Fisheries and Aquatic Sciences ,  2017
    Python

    Free

  • Hard choices in assessing survival past dams a comparison of single- and paired-release strategies

    Joseph Zydlewski, Daniel Stich, Douglas Sigourney , Canadian Journal of Fisheries and Aquatic Sciences ,  2016
    R

    Free

  • Empirical, spatially explicit natural mortality and movement rate estimates for the threatened Gulf sturgeon (Acipenser oxyrinchus desotoi)

    Merrill B. Rudd, Robert N.M. Ahrens, William E. Pine, Stephania K. Bolden , Canadian Journal of Fisheries and Aquatic Sciences ,  2014
    R

    Free

  • Understanding inter-reach variation in brown trout (Salmo trutta) mortality rates using a hierarchical Bayesian state-space model

    Victor Bret, Hervé Capra, Véronique Gouraud, Nicolas Lamouroux, Jérémy Piffady, Laurence Tissot, Etienne Rivot , Canadian Journal of Fisheries and Aquatic Sciences ,  2017
    R

    Free

  • Applying Bayesian spatiotemporal models to fisheries bycatch in the Canadian Arctic

    Aurelie Cosandey-Godin, Elias Teixeira Krainski, Boris Worm, Joanna Mills Flemming , Canadian Journal of Fisheries and Aquatic Sciences ,  2014
    R

    Free

  • Conservation Risk and Uncertainty in Recovery Prospects for a Collapsed and Culturally Important Salmon Population in a Mixed-Stock Fishery

    Brendan Connors, William Atlas, Christina Melymick, Megan Moody, Jason Moody, Alejandro Frid , Canadian Journal of Fisheries and Aquatic Sciences ,  2019
    R

    Free

  • Incorporating harvest-population diversity trade-offs into harvest policy analyses of salmon management in large river basins

    Brendan M. Connors, Benjamin Staton, Lewis Coggins, Carl Walters, Mike Jones, Daniel Gwinn, Matt Catalano, Steve Fleischman , Canadian Journal of Fisheries and Aquatic Sciences ,  2020
    R

    Free

  • Use of the stratified-Petersen estimator in fisheries management: estimating the number of pink salmon (Oncorhynchus gorbuscha) spawners in the Fraser River

    Carl James Schwarz, Carolyn Gail Taylor , Canadian Journal of Fisheries and Aquatic Sciences ,  2011
    R

    Free

  • Use of the stratified-Petersen estimator in fisheries management: estimating the number of pink salmon (Oncorhynchus gorbuscha) spawners in the Fraser River

    Carl James Schwarz, Carolyn Gail Taylor , Canadian Journal of Fisheries and Aquatic Sciences ,  2011
    R

    Free

  • Genetic stock composition of marine bycatch reveals disproportional impacts on depleted river herring genetic stocks

    Daniel J. Hasselman, Eric C. Anderson, Emily E. Argo, N. David Bethoney, Stephen R. Gephard, David M. Post, Bradley P. Schondelmeier, Thomas F. Schultz, Theodore V. Willis, Eric P. Palkovacs , Canadian Journal of Fisheries and Aquatic Sciences ,  2015
    R

    Free

  • Spatial planning for fisheries in the Northern Adriatic: working toward viable and sustainable fishing

    Francois Bastardie, Silvia Angelini, Luca Bolognini, Federico Fuga, Chiara Manfredi, Michela Martinelli, J. Rasmus Nielsen, Alberto Santojanni, Giuseppe Scarcella, Fabio Grati , ICES Journal of Marine Science ,  2017
    C

    Free

  • Spatial planning for fisheries in the Northern Adriatic: working toward viable and sustainable fishing

    Francois Bastardie, Silvia Angelini, Luca Bolognini, Federico Fuga, Chiara Manfredi, Michela Martinelli, J. Rasmus Nielsen, Alberto Santojanni, Giuseppe Scarcella, Fabio Grati , Canadian Journal of Fisheries and Aquatic Sciences ,  2017
    C

    Free

  • A Novel Method to Estimate Prey Contributions to Predator Diets

    Pamela E. Moriarty, Timothy E. Essington, Eric J. Ward , Canadian Journal of Fisheries and Aquatic Sciences ,  2016
    R

    Free

  • Love the one you’re with: genomic evidence of panmixia in the sablefish (Anoplopoma fimbria)

    Andrew J. Jasonowicz, Frederick W. Goetz, Giles W. Goetz, Krista M. Nichols , Canadian Journal of Fisheries and Aquatic Sciences ,  2016
    R

    Free

  • Assessing the recovery of an Antarctic predator from historical exploitation

    Alexandre N. Zerbini, Grant Adams, John Best, Phillip J. Clapham, Jennifer A. Jackson, Andre E. Punt , Canadian Journal of Fisheries and Aquatic Sciences ,  2019
    R

    Free

  • PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

    Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A.R. Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I.W. de Bakker, Mark J. Daly, Pak C. Sham , Canadian Journal of Fisheries and Aquatic Sciences ,  2007
    R

    Free

  • Investigating the association of fish abundance and biomass with cold-water corals in the deep Northeast Atlantic Ocean using a generalized linear modelling approach

    Matthias F. Biber, Gerard C.A. Duineveld, Marc S.S. Lavaleye, Andrew J. Davies, Magda J.N. Bergman, Inge M.J. van den Beld , ICES Journal of Marine Science ,  2013
    R

    Free

  • Investigating the association of fish abundance and biomass with cold-water corals in the deep Northeast Atlantic Ocean using a generalized linear modelling approach

    Matthias F. Biber, Gerard C.A. Duineveld, Marc S.S. Lavaleye, Andrew J. Davies, Magda J.N. Bergman, Inge M.J. van den Beld , Deep-Sea Research Part I: Oceanographic Research Papers ,  2013
    R

    Free

  • Investigating the association of fish abundance and biomass with cold-water corals in the deep Northeast Atlantic Ocean using a generalized linear modelling approach

    Matthias F. Biber, Gerard C.A. Duineveld, Marc S.S. Lavaleye, Andrew J. Davies, Magda J.N. Bergman, Inge M.J. van den Beld , Marine Ecology - Progress Series ,  2013
    R

    Free

  • Investigating the association of fish abundance and biomass with cold-water corals in the deep Northeast Atlantic Ocean using a generalized linear modelling approach

    Matthias F. Biber, Gerard C.A. Duineveld, Marc S.S. Lavaleye, Andrew J. Davies, Magda J.N. Bergman, Inge M.J. van den Beld , Canadian Journal of Fisheries and Aquatic Sciences ,  2013
    R

    Free

  • Investigating the association of fish abundance and biomass with cold-water corals in the deep Northeast Atlantic Ocean using a generalized linear modelling approach

    Matthias F. Biber, Gerard C.A. Duineveld, Marc S.S. Lavaleye, Andrew J. Davies, Magda J.N. Bergman, Inge M.J. van den Beld , Journal of the Marine Biological Association of the United Kingdom ,  2013
    R

    Free

  • A hierarchical approach to defining marine heatwaves

    Alistair J. Hobday, Lisa V. Alexander, Sarah E. Perkins, Dan A. Smale, Sandra C. Straub, Eric C.J. Oliver, Jessica A. Benthuysen, Michael T. Burrows, Markus G. Donat, Ming Feng, Neil J. Holbrook, Pippa J. Moore, Hillary A. Scannell, Alex Sen Gupta, Thomas Wernberg , Progress in Oceanography ,  2016
    Python

    Free

  • A hierarchical approach to defining marine heatwaves

    Alistair J. Hobday, Lisa V. Alexander, Sarah E. Perkins, Dan A. Smale, Sandra C. Straub, Eric C.J. Oliver, Jessica A. Benthuysen, Michael T. Burrows, Markus G. Donat, Ming Feng, Neil J. Holbrook, Pippa J. Moore, Hillary A. Scannell, Alex Sen Gupta, Thomas Wernberg , Progress in Oceanography ,  2016
    R

    Free

  • A hierarchical approach to defining marine heatwaves

    Alistair J. Hobday, Lisa V. Alexander, Sarah E. Perkins, Dan A. Smale, Sandra C. Straub, Eric C.J. Oliver, Jessica A. Benthuysen, Michael T. Burrows, Markus G. Donat, Ming Feng, Neil J. Holbrook, Pippa J. Moore, Hillary A. Scannell, Alex Sen Gupta, Thomas Wernberg , Frontiers in Marine Science ,  2016
    R

    Free

  • Random error analysis of marine xCO2 measurements in a coastal upwelling region

    Janet J. Reimer, Alejandro Cueva, Gilberto Gaxiola-Castro, Ruben Lara-Lara, Rodrigo Vargas , Progress in Oceanography ,  2016
    Matlab

    Free

  • Methods of approximation influence aquatic ecosystem metabolism estimates

    Chao Song, Walter K. Dodds, Matt T. Trentman, Janine Rüegg, Ford Ballantyne , Limnology and Oceanography ,  2016
    R

    Free

  • Methods of approximation influence aquatic ecosystem metabolism estimates

    Chao Song, Walter K. Dodds, Matt T. Trentman, Janine Rüegg, Ford Ballantyne , Limnology ,  2016
    R

    Free

  • Ecosystem respiration: Drivers of daily variability and background respiration in lakes around the globe

    Christopher T. Solomon, Denise A. Bruesewitz, David C. Richardson, Kevin C. Rose, Matthew C. Van de Bogert, Paul C. Hanson, Timothy K. Kratz, Bret Larget, Rita Adrian, Brenda Leroux Babin, Chih-Yu Chiu, David P. Hamilton, Evelyn E. Gaiser, Susan Hendricks, Vera Istvànovics, Alo Laas, David M. O'Donnell, Michael L. Pace, Elizabeth Ryder, Peter A. Staehr, Thomas Torgersen, Michael J. Vanni, Kathleen C. Weathers, Guangwei Zhu , Limnology and Oceanography ,  2016
    R

    Free

  • Ecosystem respiration: Drivers of daily variability and background respiration in lakes around the globe

    Christopher T. Solomon, Denise A. Bruesewitz, David C. Richardson, Kevin C. Rose, Matthew C. Van de Bogert, Paul C. Hanson, Timothy K. Kratz, Bret Larget, Rita Adrian, Brenda Leroux Babin, Chih-Yu Chiu, David P. Hamilton, Evelyn E. Gaiser, Susan Hendricks, Vera Istvànovics, Alo Laas, David M. O'Donnell, Michael L. Pace, Elizabeth Ryder, Peter A. Staehr, Thomas Torgersen, Michael J. Vanni, Kathleen C. Weathers, Guangwei Zhu , Limnology ,  2016
    R

    Free

  • An optimized method for correcting fluorescence quenching using optical backscattering on autonomous platforms

    Sandy J. Thomalla, William Moutier, Thomas J. Ryan-Keogh, Luke Gregor, Julia Schütt , Limnology and Oceanography ,  2017
    Python

    Free

  • An optimized method for correcting fluorescence quenching using optical backscattering on autonomous platforms

    Sandy J. Thomalla, William Moutier, Thomas J. Ryan-Keogh, Luke Gregor, Julia Schütt , Limnology ,  2017
    Python

    Free

  • The age of water and carbon in lake-catchments: A simple dynamical model

    Christopher J. Duffy, Hilary A. Dugan, Paul C. Hanson , Limnology and Oceanography ,  2018
    R

    Free

  • A Bayesian Method for Incorporating Self-Similarity Into Earthquake Slip Inversions

    R. M. J. Amey, A. Hooper, R. J. Walters , Journal of Geophysical Research ,  2018
    MATLAB

    Free

  • Complex Near-Surface Rheology Inferred From the Response of Greater Tokyo to Strong Ground Motions

    Loïc Viens, Marine A. Denolle, Naoshi Hirata, Shigeki Nakagawa , Journal of Geophysical Research ,  2018
    Python

    Free

  • VelocityConversion (Version 1.1.1)

    Christian Meeßen , Journal of Geophysical Research ,  2019
    Python

    Free

  • Spatio-temporal analysis and interpolation of PM10 measurements in Europe for 2009

    Benedikt Graeler, Mirjam Rehr, Lydia Gerharz, Edzer Pebesma , Journal of Geophysical Research ,  2013
    HTML

    Free

  • Primary and Secondary Red Bed Magnetization Constrained by Fluvial Intraclasts

    Nicholas L. Swanson‐Hysell, Luke M. Fairchild, Sarah P. Slotznick , Journal of Geophysical Research ,  2019
    Jupyter Notebook

    Free

  • Differences between surface and column atmospheric CO2and implications for carbon cycle research

    Seth C. Olsen , Journal of Geophysical Research ,  2004
    Python

    Free

  • Seismic Tremor Reveals Spatial Organization and Temporal Changes of Subglacial Water System

    Margot E. Vore, Timothy C. Bartholomaus, J. Paul Winberry, Jacob I. Walter, Jason M. Amundson , Journal of Geophysical Research ,  2019
    Python

    Free

  • Relationship between Greenland Ice Sheet surface speed and modeled effective pressure

    Laura A. Stevens, Ian J. Hewitt, Sarah B. Das, Mark D. Behn , Journal of Geophysical Research ,  2018
    Matlab

    Free

  • Estimating Tropical Rainforest Canopy Structure Across A Degradation Gradient In Malaysian Borneo

    M. Pfeifer, L. Kor, R. Nilus, E. Turner, J. Cusack, I. Lysenko, M. Khoo, V.K. Chey, A.C. Chung, R.M. Ewers , Journal of Geophysical Research ,  2016
    Python

    Free

  • Comparison of full and empirical Bayes approaches for inferring sea-level changes from tide-gauge data

    Christopher G. Piecuch, Peter Huybers, Martin P. Tingley , Journal of Geophysical Research ,  2017
    MATLAB

    Free

  • An Assessment and Improvement of Satellite Ocean Color Algorithms for the Tropical Pacific Ocean

    Nicholas A. Pittman, Peter G. Strutton, Robert Johnson, Richard J. Matear , Journal of Geophysical Research ,  2019
    Python

    Free

  • Vertical Fluxes of Nitrate in the Seasonal Nitracline of the Atlantic Sector of the Arctic Ocean

    Achim Randelhoff, Ilker Fer, Arild Sundfjord, Jean‐Éric Tremblay, Marit Reigstad , Journal of Geophysical Research ,  2016
    MATLAB

    Free

  • Oceanic Heat Delivery to the Antarctic Continental Shelf: Large-Scale, Low-Frequency Variability

    André Palóczy, Sarah T. Gille, Julie L. McClean , Journal of Geophysical Research ,  2018
    Jupyter Notebook

    Free

  • Anthropogenic mining alters macroinvertebrate size spectra in streams

    Justin P. F. Pomeranz, Helen J. Warburton, Jon S. Harding , Freshwater Biology ,  2018
    R

    Free

  • Seeking alternative stable states in a deep lake

    Rosalie Bruel, Aldo Marchetto, Anaëlle Bernard, Andrea Lami, Pierre Sabatier, Victor Frossard, Marie-Elodie Perga , Freshwater Biology ,  2018
    R

    Free

  • Overcoming long Bayesian run times in integrated fisheries stock assessments

    Cole C Monnahan, Trevor A Branch, James T Thorson, Ian J Stewart, Cody S Szuwalski , ICES Journal of Marine Science ,  2019
    R

    Free

  • Influence plots and metrics: tools for better understanding fisheries catch-per-unit-effort standardisations.

    Nokome Bentley, Terese H. Kendrick, Paul J. Starr, Paul A. Breen , ICES Journal of Marine Science ,  2011
    R

    Free

  • Measuring the vertical distributional variability of pelagic fauna in Monterey Bay

    Samuel S. Urmy, John K. Horne, David H. Barbee , ICES Journal of Marine Science ,  2012
    Python

    Free

  • Estimating uncertainty of data limited stock assessments

    Alexandros Kokkalis, Anne Maria Eikeset, Uffe H. Thygesen, Petur Steingrund, Ken H. Andersen , ICES Journal of Marine Science ,  2016
    R

    Free

  • Reconstructing global ex-vessel prices of fished species

    Michael C. Melnychuk, Tyler Clavelle, Brandon Owashi, Kent Strauss , ICES Journal of Marine Science ,  2016
    R

    Free

  • Improved parameterization of the SDWBA for estimating krill target strength

    Stéphane G. Conti, David A. Demer , ICES Journal of Marine Science ,  2006
    MATLAB

    Free

  • Mixed effects: a unifying framework for statistical modelling in fisheries biology.

    James T. Thorson, Cóilín Minto , ICES Journal of Marine Science ,  2014
    R

    Free

  • Ensemble models for data-poor assessment: accounting for uncertainty in life-history information

    Merrill B Rudd, James T Thorson, Skyler R Sagarese , ICES Journal of Marine Science ,  2019
    R

    Free

  • Detecting mortality variation to enhance forage fish population assessments

    Nis S Jacobsen, James T Thorson, Timothy E Essington , ICES Journal of Marine Science ,  2018
    R

    Free

  • Measuring the vertical distributional variability of pelagic fauna in Monterey Bay

    Samuel S. Urmy, John K. Horne, David H. Barbee , ICES Journal of Marine Science ,  2012
    Julia

    Free

  • A new approach for estimating stock status from length frequency data

    Rainer Froese, Henning Winker, Gianpaolo Coro, Nazli Demirel, Athanassios C Tsikliras, Donna Dimarchopoulou, Giuseppe Scarcella, Wolfgang Nikolaus Probst, Manuel Dureuil, Daniel Pauly , ICES Journal of Marine Science ,  2018
    R

    Free

  • Predicting sustainable shark harvests when stock assessments are lacking

    Corey J A Bradshaw, Thomas A A Prowse, Michael Drew, Bronwyn M Gillanders, Steven C Donnellan, Charlie Huveneers , ICES Journal of Marine Science ,  2018
    R

    Free

  • Estimating stock status from relative abundance and resilience

    Rainer Froese, Henning Winker, Gianpaolo Coro, Nazli Demirel, Athanassios C Tsikliras, Donna Dimarchopoulou, Giuseppe Scarcella, Maria Lourdes Deng Palomares, Manuel Dureuil, Daniel Pauly , ICES Journal of Marine Science ,  2019
    R

    Free

  • Time-varying natural mortality in fisheries stock assessment models: identifying a default approach

    Kelli F. Johnson, Cole C. Monnahan, Carey R. McGilliard, Katyana A. Vert-pre, Sean C. Anderson, Curry J. Cunningham, Felipe Hurtado-Ferro, Roberto R. Licandeo, Melissa L. Muradian, Kotaro Ono, Cody S. Szuwalski, Juan L. Valero, Athol R. Whitten, A. E. Punt , ICES Journal of Marine Science ,  2014
    R

    Free

  • Overcoming long Bayesian run times in integrated fisheries stock assessments

    Cole C Monnahan, Trevor A Branch, James T Thorson, Ian J Stewart, Cody S Szuwalski , ICES Journal of Marine Science ,  2019
    Scheme

    Free

  • Performance of multispecies assessment models: insights on the influence of diet data

    Vanessa Trijoulet, Gavin Fay, Kiersten L Curti, Brian Smith, Timothy J Miller , ICES Journal of Marine Science ,  2019
    C++

    Free

  • A two-stage biomass dynamic model for Bay of Biscay anchovy: a Bayesian approach

    Leire Ibaibarriaga, Carmen Fernández, Andrés Uriarte, Beatriz A. Roel , ICES Journal of Marine Science ,  2008
    R

    Free

  • Differential adult migration-timing and stock-specific abundance of steelhead in mixed stock assemblages

    Jon E. Hess, Michael W. Ackerman, Jeffrey K. Fryer, Daniel J. Hasselman, Craig A. Steele, Jeff J. Stephenson, John M. Whiteaker, Shawn R. Narum , ICES Journal of Marine Science ,  2016
    R

    Free

  • Bloom Phenology, Mechanisms and Future Change in the Southern Ocean

    Joan Llort , ICES Journal of Marine Science ,  2015
    Fortran

    Free

  • Automatic fish species classification in underwater videos: exploiting pre-trained deep neural network models to compensate for limited labelled data

    Shoaib Ahmed Siddiqui, Ahmad Salman, Muhammad Imran Malik, Faisal Shafait, Ajmal Mian, Mark R Shortis, Euan S Harvey , ICES Journal of Marine Science ,  2017
    Python

    Free

  • Overcoming long Bayesian run times in integrated fisheries stock assessments

    Cole C Monnahan, Trevor A Branch, James T Thorson, Ian J Stewart, Cody S Szuwalski , ICES Journal of Marine Science ,  2019
    R

    Free

  • How catch underreporting can bias stock assessment of and advice for northwest Atlantic mackerel and a possible resolution using censored catch

    Elisabeth Van Beveren, Daniel Duplisea, Martin Castonguay, Thomas Doniol-Valcroze, Stéphane Plourde, Noel Cadigan , ICES Journal of Marine Science ,  2017
    R

    Free

  • Development and application of an agent-based model to evaluate methods for estimating relative abundance indices for shoaling fish such as Pacific rockfish (Sebastes spp.)

    James T. Thorson, Ian J. Stewart, André E. Punt , ICES Journal of Marine Science ,  2012
    R

    Free

  • Connecting single-stock assessment models through correlated survival

    Christoffer Moesgaard Albertsen, Anders Nielsen, Uffe Høgsbro Thygesen , ICES Journal of Marine Science ,  2017
    R

    Free

  • Automatic fish detection in underwater videos by a deep neural network-based hybrid motion learning system

    Ahmad Salman, Shoaib Ahmad Siddiqui, Faisal Shafait, Ajmal Mian, Mark R Shortis, Khawar Khurshid, Adrian Ulges, Ulrich Schwanecke , ICES Journal of Marine Science ,  2019
    Python

    Free

  • Parsing human and biophysical drivers of coral reef regimes

    Jean-Baptiste Jouffray, Lisa M. Wedding, Albert V. Norström, Mary K. Donovan, Gareth J. Williams, Larry B. Crowder, Ashley L. Erickson, Alan M. Friedlander, Nicholas A. J. Graham, Jamison M. Gove, Carrie V. Kappel, John N. Kittinger, Joey Lecky, Kirsten L. L. Oleson, Kimberly A. Selkoe, Crow White, Ivor D. Williams, Magnus Nyström , Coral Reefs ,  2019
    HTML

    Free

  • Seabirds fuel coral reef productivity and functioning in the absence of invasive rats

    Nicholas A. J. Graham, Shaun K. Wilson, Peter Carr, Andrew S. Hoey, Simon Jennings, M. Aaron MacNeil , Coral Reefs ,  2018
    Jupyter Notebook

    Free

  • Fishing degrades size structure of coral reef fish communities

    James P. W. Robinson, Ivor D. Williams, Andrew M. Edwards, Jana McPherson, Lauren Yeager, Laurent Vigliola, Russell E. Brainard, Julia K. Baum , Coral Reefs ,  2016
    R

    Free

  • Individual and Population Benefits of Marine Reserves for Reef Sharks

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