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Science NestCategoriesAquatic Science
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Title Title
Date Date
  • Measuring the vertical distributional variability of pelagic fauna in Monterey Bay

    Samuel S. Urmy, John K. Horne, David H. Barbee , ICES Journal of Marine Science ,  2012
    Python

    Free

  • Methods of approximation influence aquatic ecosystem metabolism estimates

    Chao Song, Walter K. Dodds, Matt T. Trentman, Janine Rüegg, Ford Ballantyne , Limnology and Oceanography ,  2016
    R

    Free

  • Methods of approximation influence aquatic ecosystem metabolism estimates

    Chao Song, Walter K. Dodds, Matt T. Trentman, Janine Rüegg, Ford Ballantyne , Limnology ,  2016
    R

    Free

  • Mixed effects: a unifying framework for statistical modelling in fisheries biology.

    James T. Thorson, Cóilín Minto , ICES Journal of Marine Science ,  2014
    R

    Free

  • Multi-decadal trends and variablilty in temperature and salinity in the Mid-Atlantic Bight, Georges Bank, and Gulf of Maine

    E.J. Wallace, L.B Looney, D.Gong , Fisheries Science ,  2018
    MATLAB

    Free

  • Multiscale Analysis of River Networks using the R Package linbin

    Ethan Z. Welty, Christian E. Torgersen, Samuel J. Brenkman, Jeffrey J. Duda, Jonathan B. Armstrong , North American Journal of Fisheries Management ,  2015
    HTML

    Free

  • Multiscale Analysis of River Networks using the R Package linbin

    Ethan Z. Welty, Christian E. Torgersen, Samuel J. Brenkman, Jeffrey J. Duda, Jonathan B. Armstrong , North American Journal of Fisheries Management ,  2015
    R

    Free

  • Network structure and biodiversity loss in food webs: robustness increases with connectance

    Jennifer A. Dunne, Richard J. Williams, Neo D. Martinez , Marine Ecology - Progress Series ,  2003
    R

    Free

  • Nitrogen and carbon concentrations and stable isotope ratios: Data from a 15N tracer study in short-form Spartina alterniflora and Distichlis spicata.

    Troy D. Hill, Nathalie R. Sommer, Caroline R. Kanaskie, Emily A. Santos, Autumn J. Oczkowski , Marine Biology ,  2018
    R

    Free

  • Nitrogen and carbon concentrations and stable isotope ratios: Data from a 15N tracer study in short-form Spartina alterniflora and Distichlis spicata.

    Troy D. Hill, Nathalie R. Sommer, Caroline R. Kanaskie, Emily A. Santos, Autumn J. Oczkowski , Journal of Experimental Marine Biology and Ecology ,  2018
    R

    Free

  • Nitrogen uptake and allocation estimates for Spartina alterniflora and Distichlis spicata

    Troy D. Hill, Nathalie R. Sommer, Caroline R. Kanaskie, Emily A. Santos, Autumn J. Oczkowski , Journal of Experimental Marine Biology and Ecology ,  2018
    R

    Free

  • No-take marine reserves can enhance population persistence and support the fishery of abalone

    Marisa Rossetto, Fiorenza Micheli, Andrea Saenz-Arroyo, Jose Antonio Espinoza Montes, Giulio Alessandro De Leo , Canadian Journal of Fisheries and Aquatic Sciences ,  2015
    R

    Free

  • Nonstationary effects of ocean temperature on Pacific salmon productivity

    Michael A. Litzow, Lorenzo Ciannelli, Curry J. Cunningham, Bethany Johnson, Patricia Puerta , Canadian Journal of Fisheries and Aquatic Sciences ,  2019
    R

    Free

  • Oceanic Heat Delivery to the Antarctic Continental Shelf: Large-Scale, Low-Frequency Variability

    André Palóczy, Sarah T. Gille, Julie L. McClean , Journal of Geophysical Research ,  2018
    Jupyter Notebook

    Free

  • On the predictability of lake surface temperature using air temperature in a changing climate: A case study for Lake Tahoe (U.S.A.)

    S. Piccolroaz, N. C. Healey, J. D. Lenters, S. G. Schladow, S. J. Hook, G. B. Sahoo, M. Toffolon , Advances in Oceanography and Limnology ,  2017
    Fortran

    Free

  • Overcoming long Bayesian run times in integrated fisheries stock assessments

    Cole C Monnahan, Trevor A Branch, James T Thorson, Ian J Stewart, Cody S Szuwalski , ICES Journal of Marine Science ,  2019
    Scheme

    Free

  • Overcoming long Bayesian run times in integrated fisheries stock assessments

    Cole C Monnahan, Trevor A Branch, James T Thorson, Ian J Stewart, Cody S Szuwalski , ICES Journal of Marine Science ,  2019
    R

    Free

  • Overcoming long Bayesian run times in integrated fisheries stock assessments

    Cole C Monnahan, Trevor A Branch, James T Thorson, Ian J Stewart, Cody S Szuwalski , ICES Journal of Marine Science ,  2019
    R

    Free

  • Parental environments alter DNA methylation in offspring of the purple sea urchin, Strongylocentrotus purpuratus

    M.E. Strader, J.M. Wong, L.C. Kozal, T.S. Leach, G.E. Hofmann , Journal of Experimental Marine Biology and Ecology ,  2019
    R

    Free

  • Parsing human and biophysical drivers of coral reef regimes

    Jean-Baptiste Jouffray, Lisa M. Wedding, Albert V. Norström, Mary K. Donovan, Gareth J. Williams, Larry B. Crowder, Ashley L. Erickson, Alan M. Friedlander, Nicholas A. J. Graham, Jamison M. Gove, Carrie V. Kappel, John N. Kittinger, Joey Lecky, Kirsten L. L. Oleson, Kimberly A. Selkoe, Crow White, Ivor D. Williams, Magnus Nyström , Coral Reefs ,  2019
    HTML

    Free

  • Patterns of bleaching and recovery of Montipora capitata in Kneohe Bay, Hawaii, USA

    R Cunning, R Ritson-Williams, RD Gates , Marine Ecology - Progress Series ,  2016
    R

    Free

  • Performance of multispecies assessment models: insights on the influence of diet data

    Vanessa Trijoulet, Gavin Fay, Kiersten L Curti, Brian Smith, Timothy J Miller , ICES Journal of Marine Science ,  2019
    C++

    Free

  • PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

    Shaun Purcell, Benjamin Neale, Kathe Todd-Brown, Lori Thomas, Manuel A.R. Ferreira, David Bender, Julian Maller, Pamela Sklar, Paul I.W. de Bakker, Mark J. Daly, Pak C. Sham , Canadian Journal of Fisheries and Aquatic Sciences ,  2007
    R

    Free

  • Predicting sustainable shark harvests when stock assessments are lacking

    Corey J A Bradshaw, Thomas A A Prowse, Michael Drew, Bronwyn M Gillanders, Steven C Donnellan, Charlie Huveneers , ICES Journal of Marine Science ,  2018
    R

    Free

  • Prediction of lake surface temperature using the air2water model: guidelines, challenges, and future perspectives

    Sebastiano Piccolroaz , Advances in Oceanography and Limnology ,  2016
    Fortran

    Free

  • Primary and Secondary Red Bed Magnetization Constrained by Fluvial Intraclasts

    Nicholas L. Swanson‐Hysell, Luke M. Fairchild, Sarah P. Slotznick , Journal of Geophysical Research ,  2019
    Jupyter Notebook

    Free

  • Productive instability of coral reef fisheries after climate-driven regime shifts

    James P. W. Robinson, Shaun K. Wilson, Jan Robinson, Calvin Gerry, Juliette Lucas, Cindy Assan, Rodney Govinden, Simon Jennings, Nicholas A. J. Graham , Coral Reefs ,  2018
    R

    Free

  • Quantile regression estimates of body weight for walleye.

    Steven H. Ranney , North American Journal of Fisheries Management ,  2018
    R

    Free

  • Random error analysis of marine xCO2 measurements in a coastal upwelling region

    Janet J. Reimer, Alejandro Cueva, Gilberto Gaxiola-Castro, Ruben Lara-Lara, Rodrigo Vargas , Progress in Oceanography ,  2016
    Matlab

    Free

  • Rapid monitoring of seagrass biomass using a simple linear modelling approach, in the field and from space

    M Lyons, C Roelfsema, E Kovacs, J Samper-Villarreal, M Saunders, P Maxwell, S Phinn , Marine Ecology - Progress Series ,  2015
    R

    Free

  • Reconstructing global ex-vessel prices of fished species

    Michael C. Melnychuk, Tyler Clavelle, Brandon Owashi, Kent Strauss , ICES Journal of Marine Science ,  2016
    R

    Free

  • Reconstruction of global ex-vessel prices of fished species

    Michael Melnychuk, Tyler Clavelle, Brandon Owashi, C.Kent Strauss , Fisheries Science ,  2016
    R

    Free

  • Recruit symbiosis establishment and Symbiodiniaceae composition influenced by adult corals and reef sediment

    A. Ali, N. G. Kriefall, L. E. Emery, C. D. Kenkel, M. V. Matz, S. W. Davies , Coral Reefs ,  2019
    R

    Free

  • Recruitment sources and spatial patterns of population demographics of spotted bass in a large river-tributary network

    Nicholas J. Abell, Devon C. Oliver, Gregory W. Whitledge , Fisheries Management and Ecology ,  2018
    SAS

    Free

  • Relationship between Greenland Ice Sheet surface speed and modeled effective pressure

    Laura A. Stevens, Ian J. Hewitt, Sarah B. Das, Mark D. Behn , Journal of Geophysical Research ,  2018
    Matlab

    Free

  • Seabirds fuel coral reef productivity and functioning in the absence of invasive rats

    Nicholas A. J. Graham, Shaun K. Wilson, Peter Carr, Andrew S. Hoey, Simon Jennings, M. Aaron MacNeil , Coral Reefs ,  2018
    Jupyter Notebook

    Free

  • Seeking alternative stable states in a deep lake

    Rosalie Bruel, Aldo Marchetto, Anaëlle Bernard, Andrea Lami, Pierre Sabatier, Victor Frossard, Marie-Elodie Perga , Freshwater Biology ,  2018
    R

    Free

  • Seismic Tremor Reveals Spatial Organization and Temporal Changes of Subglacial Water System

    Margot E. Vore, Timothy C. Bartholomaus, J. Paul Winberry, Jacob I. Walter, Jason M. Amundson , Journal of Geophysical Research ,  2019
    Python

    Free

  • Sex-dependent dominance maintains migration supergene in rainbow trout

    Devon E. Pearse, Nicola J. Barson, Torfinn Nome, Guangtu Gao, Matthew A. Campbell et al , Fisheries Science ,  2019
    R

    Free

  • Smoothing Population Size Estimates for Time-Stratified Mark-Recapture Experiments Using Bayesian P-Splines

    Simon J. Bonner, Carl J. Schwarz , Canadian Journal of Fisheries and Aquatic Sciences ,  2011
    R

    Free

  • Spatial assessment of intertidal seagrass meadows using optical imaging systems and a lightweight drone

    James P. Duffy, Laura Pratt, Karen Anderson, Peter E. Land, Jamie D. Shutler , Estuarine, Coastal and Shelf Science ,  2017
    R

    Free

  • Spatial delay-difference models for estimating spatiotemporal variation in juvenile production and population abundance

    James T. Thorson, James N. Ianelli, Stephan B. Munch, Kotaro Ono, Paul D. Spencer , Canadian Journal of Fisheries and Aquatic Sciences ,  2015
    C++

    Free

  • Spatial management for protogynous sex-changing fishes: a general framework for coastal systems

    EE Easter, JW White , Marine Ecology - Progress Series ,  2015
    Matlab

    Free

  • Spatial planning for fisheries in the Northern Adriatic: working toward viable and sustainable fishing

    Francois Bastardie, Silvia Angelini, Luca Bolognini, Federico Fuga, Chiara Manfredi, Michela Martinelli, J. Rasmus Nielsen, Alberto Santojanni, Giuseppe Scarcella, Fabio Grati , ICES Journal of Marine Science ,  2017
    C

    Free

  • Spatial planning for fisheries in the Northern Adriatic: working toward viable and sustainable fishing

    Francois Bastardie, Silvia Angelini, Luca Bolognini, Federico Fuga, Chiara Manfredi, Michela Martinelli, J. Rasmus Nielsen, Alberto Santojanni, Giuseppe Scarcella, Fabio Grati , Canadian Journal of Fisheries and Aquatic Sciences ,  2017
    C

    Free

  • Spatial semiparametric models improve estimates of species abundance and distribution

    Andrew Olaf Shelton, James T. Thorson, Eric J. Ward, Blake E. Feist , ICES Journal of Marine Science ,  2014
    R

    Free

  • Spatial semiparametric models improve estimates of species abundance and distribution

    Andrew Olaf Shelton, James T. Thorson, Eric J. Ward, Blake E. Feist , Canadian Journal of Fisheries and Aquatic Sciences ,  2014
    R

    Free

  • Spatial variation and effects of habitat on temperate reef fish assemblages in northeastern New Zealand

    Marti J Anderson, Russell B Millar , Journal of Experimental Marine Biology and Ecology ,  2004
    R

    Free

  • Spatio-temporal analysis and interpolation of PM10 measurements in Europe for 2009

    Benedikt Graeler, Mirjam Rehr, Lydia Gerharz, Edzer Pebesma , Journal of Geophysical Research ,  2013
    HTML

    Free

  • Stable trophic structure across coastal nekton assemblages despite high species turnover

    S Villéger, J Ramos Miranda, D Flores Hernandez, A Sosa Lopez, D Mouillot , Marine Ecology - Progress Series ,  2008
    R

    Free

  • Substrate specificity of aquatic extracellular peptidases assessed by competitive inhibition assays using synthetic substrates

    AD Steen, JP Vazin, SM Hagen, KH Mulligan, SW Wilhelm , Aquatic Microbial Ecology ,  2015
    R

    Free

  • The Age of Water and Carbon in Lake-Catchments: A simple dynamical model

    Duffy, C.J., Dugan, H.A., Hanson, P.C , Limnology ,  2018
    R

    Free

  • The age of water and carbon in lake-catchments: A simple dynamical model

    Christopher J. Duffy, Hilary A. Dugan, Paul C. Hanson , Limnology and Oceanography ,  2018
    R

    Free

  • The composition of Standard Seawater and the definition of the Reference-Composition Salinity Scale

    Frank J. Millero, Rainer Feistel, Daniel G. Wright, Trevor J. McDougall , Deep-Sea Research Part I: Oceanographic Research Papers ,  2007
    C++

    Free

  • The Food Web of Potter Cove (Antarctica): complexity, structure and function

    Tomás I. Marina, Vanesa Salinas, Georgina Cordone, Gabriela Campana, Eugenia Moreira, Dolores Deregibus, Luciana Torre, Ricardo Sahade, Marcos Tatián, Esteban Barrera Oro, Marleen De Troch, Santiago Doyle, María Liliana Quartino, Leonardo A. Saravia, Fernando R. Momo , Estuarine, Coastal and Shelf Science ,  2017
    R

    Free

  • The Importance of Mesozooplankton Diel Vertical Migration for Sustaining a Mesopelagic Food Web

    Thomas B. Kelly, Peter C. Davison, Ralf Goericke, Michael R. Landry, Mark D. Ohman, Michael R. Stukel , Frontiers in Marine Science ,  2019
    R

    Free

  • The roles of MCDW and deep water iron supply in sustaining a recurrent phytoplankton bloom on central Pennell Bank (Ross Sea)

    Adam B. Kustka, Josh T. Kohut, Angelicque E. White, Phoebe J. Lam, Allen J. Milligan, Michael S. Dinniman, Stefanie Mack, Elias Hunter, Michael R. Hiscock, Walker O. Smith, Chris I. Measures , Deep-Sea Research Part I: Oceanographic Research Papers ,  2015
    Fortran

    Free

  • Thermal stress induces persistently altered coral reef fish assemblages

    James P. W. Robinson, Shaun K. Wilson, Simon Jennings, Nicholas A. J. Graham , Coral Reefs ,  2019
    R

    Free

  • Thermal time explains size-at-age variation in molluscs

    F Broell, JSP McCain, CT Taggart , Marine Ecology - Progress Series ,  2017
    R

    Free

  • Time-varying natural mortality in fisheries stock assessment models: identifying a default approach

    Kelli F. Johnson, Cole C. Monnahan, Carey R. McGilliard, Katyana A. Vert-pre, Sean C. Anderson, Curry J. Cunningham, Felipe Hurtado-Ferro, Roberto R. Licandeo, Melissa L. Muradian, Kotaro Ono, Cody S. Szuwalski, Juan L. Valero, Athol R. Whitten, A. E. Punt , ICES Journal of Marine Science ,  2014
    R

    Free

  • Understanding inter-reach variation in brown trout (Salmo trutta) mortality rates using a hierarchical Bayesian state-space model

    Victor Bret, Hervé Capra, Véronique Gouraud, Nicolas Lamouroux, Jérémy Piffady, Laurence Tissot, Etienne Rivot , Canadian Journal of Fisheries and Aquatic Sciences ,  2017
    R

    Free

  • Urban wastewater bacterial communities assemble into seasonal steady states

    Holger Daims, Michael W. Taylor, Michael Wagner , Freshwater Science ,  2006
    R

    Free

  • Use of the stratified-Petersen estimator in fisheries management: estimating the number of pink salmon (Oncorhynchus gorbuscha) spawners in the Fraser River

    Carl James Schwarz, Carolyn Gail Taylor , Canadian Journal of Fisheries and Aquatic Sciences ,  2011
    R

    Free

  • Use of the stratified-Petersen estimator in fisheries management: estimating the number of pink salmon (Oncorhynchus gorbuscha) spawners in the Fraser River

    Carl James Schwarz, Carolyn Gail Taylor , Canadian Journal of Fisheries and Aquatic Sciences ,  2011
    R

    Free

  • Using threat maps for cost-effective prioritization of actions to conserve coastal habitats

    Sylvaine Giakoumi, Christopher J. Brown, Stelios Katsanevakis, Megan I. Saunders, Hugh P. Possingham , Marine Policy ,  2015
    R

    Free

  • Validation of a hidden Markov model for the geolocation of Atlantic cod

    Chang Liu, Geoffrey W. Cowles, Douglas R. Zemeckis, Steven X. Cadrin, Micah J. Dean , Canadian Journal of Fisheries and Aquatic Sciences ,  2017
    Matlab

    Free

  • VelocityConversion (Version 1.1.1)

    Christian Meeßen , Journal of Geophysical Research ,  2019
    Python

    Free

  • Vertical Fluxes of Nitrate in the Seasonal Nitracline of the Atlantic Sector of the Arctic Ocean

    Achim Randelhoff, Ilker Fer, Arild Sundfjord, Jean‐Éric Tremblay, Marit Reigstad , Journal of Geophysical Research ,  2016
    MATLAB

    Free

  • Vertical swimming behavior influences the dispersal of simulated oyster larvae in a coupled particle-tracking and hydrodynamic model of Chesapeake Bay

    EW North, Z Schlag, RR Hood, M Li, L Zhong, T Gross, VS Kennedy , Marine Ecology - Progress Series ,  2007
    Fortran

    Free

  • Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

    Paul J. McMurdie, Susan Holmes , Marine Ecology - Progress Series ,  2014
    HTML

    Free

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