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2matrix: A utility for indel coding and phylogenetic matrix concatenation
Nelson R. Salinas, Damon P. Little , International Journal of Plant Sciences , 2014PerlFree
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842Metacommunity, mainland-island system or island communities? Assessing the regional dynamics of plant communities in a fragmented landscape
Felix May, Itamar Giladi, Michael Ristow, Yaron Ziv and Florian Jeltsch , Perspectives in Plant Ecology, Evolution and Systematics , 2013C++Free
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A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
Richard O. Prum, Jacob S. Berv, Alex Dornburg, Daniel J. Field, Jeffrey P. Townsend, Emily Moriarty Lemmon & Alan R. Lemmon , Evolutionary Biology , 2015JavaFree
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A convolutional neural network for detecting sea turtles in drone imagery
Patrick C. Gray, Abram B. Fleishman, David J. Klein, Matthew W. McKown, Vanessa S. Bézy, Kenneth J. Lohmann, David W. Johnston , Methods in Ecology and Evolution , 2018PythonFree
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A convolutional neural network for detecting sea turtles in drone imagery
Patrick C. Gray, Abram B. Fleishman, David J. Klein, Matthew W. McKown, Vanessa S. Bézy, Kenneth J. Lohmann, David W. Johnston , Methods in Ecology and Evolution , 2018PythonFree
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A current affair: entanglement of humpback whales in coastal shark-control nets
Jessica A. Bolin, David S. Schoeman, Carme Pizà-Roca, Kylie L. Scales , Remote Sensing in Ecology and Conservation , 2019RFree
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A current affair: entanglement of humpback whales in coastal shark-control nets
Jessica A. Bolin, David S. Schoeman, Carme Pizà-Roca, Kylie L. Scales , Remote Sensing in Ecology and Conservation , 2019RFree
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A Fast Algorithm for Joint Reconstruction of Ancestral Amino Acid Sequences
Tal Pupko, Itsik Pe, Ron Shamir, Dan Graur , Molecular Biology and Evolution , 2000PythonFree
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A Galaxy-based bioinformatics pipeline for optimised, streamlined microsatellite development from Illumina next-generation sequencing data
Sarah M. Griffiths, Graeme Fox, Peter J. Briggs, Ian J. Donaldson, Simon Hood, Pen Richardson, George W. Leaver, Nathan K. Truelove & Richard F. Preziosi , Conservation Genetics Resources , 2016PythonFree
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A Galaxy-based bioinformatics pipeline for optimised, streamlined microsatellite development from Illumina next-generation sequencing data
Sarah M. Griffiths, Graeme Fox, Peter J. Briggs, Ian J. Donaldson, Simon Hood, Pen Richardson, George W. Leaver, Nathan K. Truelove & Richard F. Preziosi , Conservation Genetics , 2016PythonFree
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A guide to the application of Hill numbers to DNA-based diversity analyses
Antton Alberdi, M. Thomas P. Gilbert , Methods in Ecology and Evolution , 2019RFree
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A guide to the application of Hill numbers to DNA-based diversity analyses
Antton Alberdi, M. Thomas P. Gilbert , Methods in Ecology and Evolution , 2019RFree
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A Humboldtian approach to life and climate of the geological past: Estimating palaeotemperature from dental traits of mammalian communities
Otto Oksanen, Indrė Žliobaitė, Juha Saarinen, A. Michelle Lawing, Mikael Fortelius , Journal of Biogeography , 2019RFree
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A Humboldtian approach to life and climate of the geological past: Estimating palaeotemperature from dental traits of mammalian communities
Otto Oksanen, Indrė Žliobaitė, Juha Saarinen, A. Michelle Lawing, Mikael Fortelius , Journal of Biogeography , 2019RFree
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A Learning Theory for Reward-Modulated Spike-Timing-Dependent Plasticity with Application to Biofeedback
Robert Legenstein , Dejan Pecevski , Wolfgang Maass , PLoS Computational Biology , 2008PythonFree
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A Learning Theory for Reward-Modulated Spike-Timing-Dependent Plasticity with Application to Biofeedback
Robert Legenstein , Dejan Pecevski , Wolfgang Maass , PLoS Computational Biology , 2008PythonFree
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A meta-analysis of changes in bacterial and archaeal communities with time
Ashley Shade, J Gregory Caporaso, Jo Handelsman, Rob Knight, Noah Fierer , ISME Journal , 2013RFree
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A New Method for Estimation of Resource Selection Probability Function
SUBHASH R. LELE , Methods in Ecology and Evolution , 2010RFree
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A novel method for assessing climate change impacts in ecotron experiments
Inne Vanderkelen, Jakob Zscheischler, Lukas Gudmundsson, Klaus Keuler, Francois Rineau, Natalie Beenaerts, Jaco Vangronsveld, Sara Vicca & Wim Thiery , Biogeosciences , 2020MATLABFree
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A novel method for assessing climate change impacts in ecotron experiments
Inne Vanderkelen, Jakob Zscheischler, Lukas Gudmundsson, Klaus Keuler, Francois Rineau, Natalie Beenaerts, Jaco Vangronsveld, Sara Vicca & Wim Thiery , Biogeosciences , 2020MATLABFree
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A package for motif analyses of bipartite networks
Benno I. Simmons, Michelle J. M. Sweering, Maybritt Schillinger, Lynn V. Dicks, William J. Sutherland, Riccardo Di Clemente , Methods in Ecology and Evolution , 2019RFree
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A package for motif analyses of bipartite networks
Benno I. Simmons, Michelle J. M. Sweering, Maybritt Schillinger, Lynn V. Dicks, William J. Sutherland, Riccardo Di Clemente , Methods in Ecology and Evolution , 2019RFree
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A practical guide to structured expert elicitation using the IDEA protocol
Victoria Hemming, Mark A. Burgman, Anca M. Hanea, Marissa F. McBride, Bonnie C. Wintle , Methods in Ecology and Evolution , 2017RFree
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A practical guide to structured expert elicitation using the IDEA protocol
Victoria Hemming, Mark A. Burgman, Anca M. Hanea, Marissa F. McBride, Bonnie C. Wintle , Methods in Ecology and Evolution , 2017RFree
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A practical method to account for variation in detection range in acoustic telemetry arrays to accurately quantify the spatial ecology of aquatic animals
Jacob W. Brownscombe, Lucas P. Griffin, Jacqueline M. Chapman, Danielle Morley, Alejandro Acosta, Glenn T. Crossin, Sara J. Iverson, Aaron J. Adams, Steven J. Cooke, Andy J. Danylchuk , Methods in Ecology and Evolution , 2019RFree
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A practical method to account for variation in detection range in acoustic telemetry arrays to accurately quantify the spatial ecology of aquatic animals
Jacob W. Brownscombe, Lucas P. Griffin, Jacqueline M. Chapman, Danielle Morley, Alejandro Acosta, Glenn T. Crossin, Sara J. Iverson, Aaron J. Adams, Steven J. Cooke, Andy J. Danylchuk , Methods in Ecology and Evolution , 2019RFree
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A practical method to account for variation in detection range in acoustic telemetry arrays to accurately quantify the spatial ecology of aquatic animals
Jacob W. Brownscombe, Lucas P. Griffin, Jacqueline M. Chapman, Danielle Morley, Alejandro Acosta, Glenn T. Crossin, Sara J. Iverson, Aaron J. Adams, Steven J. Cooke, Andy J. Danylchuk , Ecology and Evolution , 2019RFree
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A quantitative framework for investigating the reliability of empirical network construction
Alyssa R. Cirtwill, Anna Eklöf, Tomas Roslin, Kate Wootton, Dominique Gravel , Methods in Ecology and Evolution , 2019RFree
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A quantitative framework for investigating the reliability of empirical network construction
Alyssa R. Cirtwill, Anna Eklöf, Tomas Roslin, Kate Wootton, Dominique Gravel , Methods in Ecology and Evolution , 2019RFree
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A shared coevolutionary history does not alter the outcome of coalescence in experimental populations of Pseudomonas fluorescens
Meaghan Castledine, Angus Buckling, Daniel Padfield , Journal of Evolutionary Biology , 2018RFree
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A shared coevolutionary history does not alter the outcome of coalescence in experimental populations of Pseudomonas fluorescens
Meaghan Castledine, Angus Buckling, Daniel Padfield , Evolutionary Biology , 2018RFree
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A simulation tool to scrutinise the behaviour of functional diversity metrics
Jana M. McPherson, Lauren A. Yeager, Julia K. Baum , Methods in Ecology and Evolution , 2017RFree
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A simulation tool to scrutinise the behaviour of functional diversity metrics
Jana M. McPherson, Lauren A. Yeager, Julia K. Baum , Ecology and Evolution , 2017RFree
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A simulation tool to scrutinise the behaviour of functional diversity metrics
Jana M. McPherson, Lauren A. Yeager, Julia K. Baum , Methods in Ecology and Evolution , 2017RFree
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A Sparse Coding Model with Synaptically Local Plasticity and Spiking Neurons Can Account for the Diverse Shapes of V1 Simple Cell Receptive Fields
Joel Zylberberg , Jason Timothy Murphy, Michael Robert DeWeese , PLoS Computational Biology , 2011PythonFree
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A Sparse Coding Model with Synaptically Local Plasticity and Spiking Neurons Can Account for the Diverse Shapes of V1 Simple Cell Receptive Fields
Joel Zylberberg , Jason Timothy Murphy, Michael Robert DeWeese , PLoS Computational Biology , 2011PythonFree
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A theoretical framework for analyzing coupled neuronal networks: Application to the olfactory system
Andrea K. Barreiro, Shree Hari Gautam, Woodrow L. Shew, Cheng Ly , PLoS Computational Biology , 2017MatlabFree
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A theoretical framework for analyzing coupled neuronal networks: Application to the olfactory system
Andrea K. Barreiro, Shree Hari Gautam, Woodrow L. Shew, Cheng Ly , PLoS Computational Biology , 2017MatlabFree
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A Trait-Based Model for Describing the Adaptive Dynamics of Coral-Algae Symbiosis
N. Alexia Raharinirina, Gunnar Brandt, Agostino Merico , Frontiers in Ecology and Evolution , 2017PythonFree
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A Voltage-Based STDP Rule Combined with Fast BCM-Like Metaplasticity Accounts for LTP and Concurrent “Heterosynaptic” LTD in the Dentate Gyrus In Vivo
Peter Jedlicka , Lubica Benuskova , Wickliffe C. Abraham , PLoS Computational Biology , 2015AMPLFree
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A Voltage-Based STDP Rule Combined with Fast BCM-Like Metaplasticity Accounts for LTP and Concurrent “Heterosynaptic” LTD in the Dentate Gyrus In Vivo
Peter Jedlicka , Lubica Benuskova , Wickliffe C. Abraham , PLoS Computational Biology , 2015AMPLFree
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A world of sequences: can we use georeferenced nucleotide databases for a robust automated phylogeography?
Paolo Gratton, Silvio Marta, Gaëlle Bocksberger, Marten Winter, Emiliano Trucchi, Hjalmar Kühl , Journal of Biogeography , 2016RFree
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A world of sequences: can we use georeferenced nucleotide databases for a robust automated phylogeography?
Paolo Gratton, Silvio Marta, Gaëlle Bocksberger, Marten Winter, Emiliano Trucchi, Hjalmar Kühl , Journal of Biogeography , 2016RFree
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Abunance of common species, not species richness, drives delivery of a real-world ecosystem service
Rachael Winfree, Jeremy W. Fox, Neal M. Williams, James R. Reilly, Daniel P.Cariveau , Ecology Letters , 2015RFree
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Abundance and Distribution of Transposable Elements in Two Drosophila QTL Mapping Resources
Julie M. Cridland, Stuart J. Macdonald, Anthony D. Long, Kevin R. Thornton , Genome Biology and Evolution , 2013C++Free
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Abundance and Distribution of Transposable Elements in Two Drosophila QTL Mapping Resources
Julie M. Cridland, Stuart J. Macdonald, Anthony D. Long, Kevin R. Thornton , Genome Biology and Evolution , 2013C++Free
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Accounting for Phylogenetic Uncertainty in Biogeography: A Bayesian Approach to Dispersal-Vicariance Analysis of the Thrushes
Johan A A Nylander,Urban Olsson,Per Alström,Isabel Sanmartín , Systematic Biology , 2008PerlFree
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Active learning for classifying long-duration audio recordings of the environment
Mahnoosh Kholghi, Yvonne Phillips, Michael Towsey, Laurianne Sitbon, Paul Roe , Methods in Ecology and Evolution , 2018JavaFree
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Active learning for classifying long-duration audio recordings of the environment
Mahnoosh Kholghi, Yvonne Phillips, Michael Towsey, Laurianne Sitbon, Paul Roe , Methods in Ecology and Evolution , 2018JavaFree
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Age, Growth, and Size of Lake Superior Pygmy Whitefish (Prosopium coulterii)
Taylor R. Stewart, Derek H. Ogle , American Midland Naturalist , 2016RFree
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Algorithmic approaches to aid species' delimitation in multidimensional morphospace
Thomas HG Ezard, Paul N Pearson & Andy Purvis , Evolutionary Biology , 2020RFree
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Algorithmic approaches to aid species' delimitation in multidimensional morphospace
Thomas HG Ezard, Paul N Pearson & Andy Purvis , BMC Evolutionary Biology , 2020RFree
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Algorithmic approaches to aid species' delimitation in multidimensional morphospace
Thomas HG Ezard, Paul N Pearson & Andy Purvis , BMC Evolutionary Biology , 2020RFree
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Allelic diversity for neutral markers retains a higher adaptive potential for quantitative traits than expected heterozygosity
Ana Vilas, Andrés Pérez-Figueroa, Humberto Quesada, Armando Caballero , Molecular Ecology , 2015ShellFree
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Allelic diversity for neutral markers retains a higher adaptive potential for quantitative traits than expected heterozygosity
Ana Vilas, Andrés Pérez-Figueroa, Humberto Quesada, Armando Caballero , Molecular Ecology , 2015ShellFree
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Among-strain consistency in the pace and shape of senescence in duckweed
Patrick M. Barks, Zach W. Dempsey, Theresa M. Burg, Robert A. Laird , Journal of Ecology , 2018RFree
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Among-strain consistency in the pace and shape of senescence in duckweed
Patrick M. Barks, Zach W. Dempsey, Theresa M. Burg, Robert A. Laird , Journal of Ecology , 2018RFree
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An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BedArray
Lucas A. Salas, Devin C. Koestler, Rondi A. Butler, Helen M.Hansen, John K. Wiencke, Karl T. Kelsey, Brock C. Christensen , Genome Biology , 2018RFree
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An r package and online resource for macroevolutionary studies using the ray-finned fish tree of life
Jonathan Chang, Daniel L. Rabosky, Stephen A. Smith, Michael E. Alfaro , Methods in Ecology and Evolution , 2019RFree
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An r package and online resource for macroevolutionary studies using the ray-finned fish tree of life
Jonathan Chang, Daniel L. Rabosky, Stephen A. Smith, Michael E. Alfaro , Methods in Ecology and Evolution , 2019RFree
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An r package and online resource for macroevolutionary studies using the ray-finned fish tree of life
Jonathan Chang, Daniel L. Rabosky, Stephen A. Smith, Michael E. Alfaro , Methods in Ecology and Evolution , 2019RFree
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An r package and online resource for macroevolutionary studies using the ray-finned fish tree of life
Jonathan Chang, Daniel L. Rabosky, Stephen A. Smith, Michael E. Alfaro , Methods in Ecology and Evolution , 2019RFree
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Animal diversity and ecosystem functioning in dynamic food webs
Florian D. Schneider, Ulrich Brose, Björn C. Rall & Christian Guill , Food Webs , 2016CFree
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Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes
Michelle A. Berry, Jeffrey D. White, Timothy W. Davis, Sunit Jain, Thomas H. Johengen, Gregory J. Dick, Orlando Sarnelle, Vincent J. Denef , Microbial Ecology , 2017HTMLFree
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Are variations of direct and indirect plant interactions along a climatic gradient dependent on species’ strategies? An experiment on tree seedlings
Emmanuel Defossez, Benoît Courbaud, Olivier Lasbouygues, Katja Schiffers, Georges Kunstler , Oikos , 2015RFree
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Are variations of direct and indirect plant interactions along a climatic gradient dependent on species’ strategies? An experiment on tree seedlings
Emmanuel Defossez, Benoît Courbaud, Olivier Lasbouygues, Katja Schiffers, Georges Kunstler , Oikos , 2015RFree
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Assessing adequacy of models of phyletic evolution in the fossil record
Kjetil Lysne Voje , Methods in Ecology and Evolution , 2018RFree
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Assessing adequacy of models of phyletic evolution in the fossil record
Kjetil Lysne Voje , Methods in Ecology and Evolution , 2018RFree
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Automatic generation of evolutionary hypotheses using mixed Gaussian phylogenetic models
Venelin Mitov, Krzysztof Bartoszek, and Tanja Stadler , Methods in Ecology and Evolution , 2019RFree
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Automatic generation of evolutionary hypotheses using mixed Gaussian phylogenetic models
Venelin Mitov, Krzysztof Bartoszek, and Tanja Stadler , Methods in Ecology and Evolution , 2019RFree
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Automatic methods for long-term tracking and the detection and decoding of communication dances in honeybees
Fernando Wario, Benjamin Wild, Margaret J. Couvillon Raúa Rojas, Tim Landgraf , Frontiers in Ecology and Evolution , 2015C++Free
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BA3-SNPs: Contemporary migration reconfigured in BayesAss for next-generation sequence data
Steven M. Mussmann, Marlis R. Douglas, Tyler K. Chafin, Michael E. Douglas , Methods in Ecology and Evolution , 2019PythonFree
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BA3-SNPs: Contemporary migration reconfigured in BayesAss for next-generation sequence data
Steven M. Mussmann, Marlis R. Douglas, Tyler K. Chafin, Michael E. Douglas , Methods in Ecology and Evolution , 2019PythonFree
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babette: BEAUti 2, BEAST2 and Tracer for R
Richèl J. C. Bilderbeek, Rampal S. Etienne , Methods in Ecology and Evolution , 2018RFree
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babette: BEAUti 2, BEAST2 and Tracer for R
Richèl J. C. Bilderbeek, Rampal S. Etienne , Methods in Ecology and Evolution , 2018RFree
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babette: BEAUti 2, BEAST2 and Tracer for R
Richèl J. C. Bilderbeek, Rampal S. Etienne , Methods in Ecology and Evolution , 2018RFree
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babette: BEAUti 2, BEAST2 and Tracer for R
Richèl J. C. Bilderbeek, Rampal S. Etienne , Methods in Ecology and Evolution , 2018RFree
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babette: BEAUti 2, BEAST2 and Tracer for R
Richèl J. C. Bilderbeek, Rampal S. Etienne , Methods in Ecology and Evolution , 2018RFree
-
babette: BEAUti 2, BEAST2 and Tracer for R
Richèl J. C. Bilderbeek, Rampal S. Etienne , Methods in Ecology and Evolution , 2018RFree
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babette: BEAUti 2, BEAST2 and Tracer for R
Richèl J. C. Bilderbeek, Rampal S. Etienne , Methods in Ecology and Evolution , 2018RFree
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Biogeochemical impacts of wildfires over four millennia in a Rocky Mountain subalpine watershed. New Phytologist.
Dunnette, P.V., P.E. Higuera, K.K. McLauchlan, K.M. Derr, C.E. Briles, and M.H. Keefe , Fire Ecology , 2014MatlabFree
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Blobal photsynthetic capacity is optimized to the environment
Nicholas G. Smith, Trevor F. Keenan, I.Colin Prentice, Han Wang , Ecology Letters , 2019RFree
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Can phylogeny predict chemical diversity and potential medicinal activity of plants? A case study of amaryllidaceae
Nina Rønsted, Matthew R E Symonds, Trine Birkholm, Søren Brøgger Christensen, Alan W Meerow, Marianne Molander, Per Mølgaard, Gitte Petersen, Nina Rasmussen, Johannes van Staden, Gary I Stafford & Anna K Jäger , Evolutionary Biology , 2012PerlFree
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Can time-to-detection models with fewer survey replicates provide a robust alternative to traditional site-occupancy models?
Dominic A. W. Henry, Alan T. K. Lee, Res Altwegg , Methods in Ecology and Evolution , 2020RFree
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Can time-to-detection models with fewer survey replicates provide a robust alternative to traditional site-occupancy models?
Dominic A. W. Henry, Alan T. K. Lee, Res Altwegg , Methods in Ecology and Evolution , 2020RFree
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Can time-to-detection models with fewer survey replicates provide a robust alternative to traditional site-occupancy models?
Dominic A. W. Henry, Alan T. K. Lee, Res Altwegg , Ecology and Evolution , 2020RFree
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Cerebellar Nuclear Neurons Use Time and Rate Coding to Transmit Purkinje Neuron Pauses
Shyam Kumar Sudhakar, Benjamin Torben-Nielsen, Erik De Schutter , PLoS Computational Biology , 2015AMPLFree
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Cerebellar Nuclear Neurons Use Time and Rate Coding to Transmit Purkinje Neuron Pauses
Shyam Kumar Sudhakar, Benjamin Torben-Nielsen, Erik De Schutter , PLoS Computational Biology , 2015AMPLFree
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Clustering and correlations: Inferring resilience from spatial patterns in ecosystems
Sumithra Sankaran, Sabiha Majumder, Ashwin Viswanathan, Vishwesha Guttal , Methods in Ecology and Evolution , 2019RFree
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Clustering and correlations: Inferring resilience from spatial patterns in ecosystems
Sumithra Sankaran, Sabiha Majumder, Ashwin Viswanathan, Vishwesha Guttal , Methods in Ecology and Evolution , 2019RFree
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Communication through Resonance in Spiking Neuronal Networks
Gerald Hahn , Alejandro F. Bujan , Yves Frégnac, Ad Aertsen, Arvind Kumar , PLoS Computational Biology , 2014PythonFree
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Communication through Resonance in Spiking Neuronal Networks
Gerald Hahn , Alejandro F. Bujan , Yves Frégnac, Ad Aertsen, Arvind Kumar , PLoS Computational Biology , 2014PythonFree
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Comparative assessment of methods for aligning multiple genome sequences
Xiaoyu Chen, Martin Tompa , Genome Biology , 2010CFree
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Comparative genomics in the Asteraceae reveals little evidence for parallel evolutionary change in invasive taxa
Kathryn A. Hodgins, Dan G. Bock, Min A. Hahn, Sylvia M. Heredia, Kathryn G. Turner, Loren H. Rieseberg , Molecular Ecology , 2014RFree
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Comparative genomics in the Asteraceae reveals little evidence for parallel evolutionary change in invasive taxa
Kathryn A. Hodgins, Dan G. Bock, Min A. Hahn, Sylvia M. Heredia, Kathryn G. Turner, Loren H. Rieseberg , Molecular Ecology , 2014RFree
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Comparison of computational methods for the identification of topologically assocaiting domains
Marie Zufferey, Daniele Tavernari, Elisa Oricchio, Giovanni Ciriello , Genome Biology , 2018RFree
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Comparison of ground cover estimates from experiment plots in cotton, sorghum and sugarcane based on images and ortho-mosaics captured by UAV
Tao Duan, Bangyiu Zheng, Wei Guo, Seishi Ninomiya, Yan Guo, Scott C. Chapman , Plant Biology , 2016MATLABFree
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Compendium of R code and data for Is prediction of species richness from Stacked Species Distribution Models biased by habitat saturation?.
Grenié M, Violle C, mUNOZ f. , Ecological Indicators , 2019RFree
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Computational Models Describing Possible Mechanisms for Generation of Excessive Beta Oscillations in Parkinson’s Disease
Alex Pavlides, S. John Hogan, Rafal Bogacz , PLoS Computational Biology , 2015MATLABFree
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Computational Models Describing Possible Mechanisms for Generation of Excessive Beta Oscillations in Parkinson’s Disease
Alex Pavlides, S. John Hogan, Rafal Bogacz , PLoS Computational Biology , 2015MATLABFree
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