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Extending R packages to support 64-bit compiled code: An illustration with spam64 and GIMMS NDVI3g data
Florian Gerber, Kaspar Mösinger, Reinhard Furrer , Computers & Geosciences , 2017RFree
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Penalized Likelihood Estimation of a Trivariate Additive Probit Model
Panagiota Filippou, Giampiero Marra, Rosalba Radice , Biostatistics , 2017RFree
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Sample size calculations for studies with correlated observations
Guanghan F Liu, Kung-Yee Liang , Biometrics , 1997RFree
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On-line relational and multiple relational SOM
Madalina Olteanu, Nathalie Villa-Vialaneix , Neurocomputing , 2015RFree
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spBayes: An R Package for Univariate and Multivariate Hierarchical Point-Referenced Spatial Models
Andrew O. Finley, Sudipto Banerjee, Bradley P. Carlin , Journal of statistical software , 2007RFree
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polysat: an R package for polyploid microsatellite analysis
Lindsay V. Clark, Marie Jasieniuk , Molecular ecology resources , 2011RFree
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Visual management of performance with PROMETHEE productivity analysis
Alessio Ishizaka, Giuliano Resce, Bertrand Mareschal , Soft Comput. , 2018RFree
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tqDist: a library for computing the quartet and triplet distances between binary or general trees
Andreas Sand, Morten Kragelund Holt, Jens Johansen, Gerth Stølting Brodal, Thomas Mailund, Christian N. S. Pedersen , Bioinformatics , 2014RFree
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Simultaneous Inference in General Parametric Models
Torsten Hothorn, Frank Bretz, Peter Westfall , Biometrical journal. Biometrische Zeitschrift , 2008RFree
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Estimating abundances of retroviral insertion sites from DNA fragment length data
Charles C. Berry, Nicolas A. Gillet, Anat Melamed, Niall A. Gormley, Charles R. M. Bangham, Frederic D. Bushman , Bioinformatics , 2012RFree
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spMC: an R-package for 3D lithological reconstructions based on spatial Markov chains
Luca Sartore, Paolo Fabbri, Carlo Gaetan , Computers & Geosciences , 2016RFree
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Near real time weather and ocean model data access with rNOMADS
D. C. Bowman, J. M. Lees , Computers & Geosciences , 2015RFree
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Efficient analysis of large-scale genome-wide data with two R packages: bigstatsr and bigsnpr
Florian Privé, Hugues Aschard, Andrey Ziyatdinov, Michael G. B. Blum , Bioinformatics , 2018RFree
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pez: Phylogenetics for the Environmental Sciences
William D. Pearse, Marc W. Cadotte, +4 authors Matthew R. Helmus , Bioinformatics , 2015RFree
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Group descent algorithms for nonconvex penalized linear and logistic regression models with grouped predictors
Patrick J Breheny, Jian Huang , Statistics and Computing , 2015RFree
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Coordinate descent algorithms for nonconvex penalized regression, with applications to biological feature selection
Patrick Breheny, Jian Huang , THE ANNALS OF APPLIED STATISTICS , 2011RFree
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MCMCvis: Tools to visualize, manipulate, and summarize MCMC output
Casey Youngflesh , J. Open Source Software , 2018RFree
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Comparing isotopic niche widths among and within communities: SIBER – Stable Isotope Bayesian Ellipses in R
Andrew L. Jackson, Richard Inger, Andrew C. Parnell, Stuart Bearhop , JOURNAL OF ANIMAL ECOLOGY , 2011RFree
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Detecting Treatment-Subgroup Interactions in clustered Data With Generalized Linear Mixed-Effects Model Trees
Marjolein Fokkema, Niels Smits, Achim Zeileis, Torsten Hothorn, Henk Kelderman , Behavior research methods , 2018RFree
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visdat: Visualising Whole Data Frames
Nicholas J Tierney , J. Open Source Software , 2017RFree
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mRMRe: an R package for parallelized mRMR ensemble feature selection
Nicolas De Jay, Simon Papillon-Cavanagh, Catharina Olsen, Nehme Hachem, Gianluca Bontempi, Benjamin Haibe-Kains , Bioinformatics , 2013RFree
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An Improved Strategy for Bayesian Estimation of the Reduced Reparameterized Unified Model
Steven Andrew Culpepper, Aaron Hudson , Applied psychological measurement , 2018RFree
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SparseNet: Coordinate Descent With Nonconvex Penalties
Rahul Mazumder, Jerome H. Friedman, Trevor J. Hastie , Journal of the American Statistical Association , 2011RFree
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cartography: Create and Integrate Maps in your R Workflow
Timothée Giraud, Nicolas Lambert , J. Open Source Software , 2016RFree
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Bayesian and parsimony approaches reconstruct informative trees from simulated morphological datasets
Martin R Smith , Biology letters , 2019RFree
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iml: An R package for Interpretable Machine Learning
Christoph Molnar, Giuseppe Casalicchio, Bernd Bischl , J. Open Source Software , 2018RFree
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Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data
Philippe Bastien, Frédéric Bertrand, Nicolas Meyer, Myriam Maumy-Bertrand , Bioinformatics , 2015RFree
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Weighted-Lasso for Structured Network Inference from Time Course Data
Camille Charbonnier, Julien Chiquet, Christophe Ambroise , Statistical applications in genetics and… , 2010RFree
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Regularization Paths for Conditional Logistic Regression: The clogitL1 Package
Stephen James Reid, Rob Tibshirani , Journal of statistical software , 2014RFree
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QCEWAS: automated quality control of results of epigenome-wide association studies
Peter J. van der Most, Leanne K. Küpers, Harold Snieder, Ilja M. Nolte , Bioinformatics , 2017RFree
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KnowBR: An application to map the geographical variation of survey effort and identify well-surveyed areas from biodiversity databases
Jorge M. Lobo, Joaquín Hortal, José Luís Yela, Andrés Millán, David SánchezFernández , et al. , ECOLOGICAL INDICATORS , 2018RFree
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Modules based on the geochemical model PHREEQC for use in scripting and programming languages
Scott R. Charlton, David L. Parkhurst , Computers & Geosciences , 2011RFree
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SPEDInstabR: An algorithm based on a fluctuation index for selecting predictors in species distribution modeling
Cástor Guisande, Emilio García Roselló, +4 authors Jorge M. Lobo , Ecological Informatics , 2017RFree
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Malaria parasite clearance rate regression: an R software package for a Bayesian hierarchical regression model
Saeed Sharifi-Malvajerdi, Feiyu Zhu, +5 authors Dylan S. Small , Malaria Journal , 2018RFree
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An introduction to principal surrogate evaluation with the pseval package
Michael C. Sachs, Erin E Gabriel , The R journal , 2016RFree
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genoPlotR: comparative gene and genome visualization in R
Lionel Guy, Jens Roat Kultima, Siv G. E. Andersson , Bioinformatics , 2010RFree
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Risk prediction for heterogeneous populations with application to hospital admission prediction
Jared D Huling, Menggang Yu, Muxuan Liang, Maureen A Smith , Biometrics , 2018RFree
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phylosignal: an R package to measure, test, and explore the phylogenetic signal
François Keck, Frédéric Rimet, Agnès Bouchez, Alain Franc , Ecology and evolution , 2016RFree
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Bayesian Fractional Polynomials
Daniel Sabanés Bové, Leonhard Held , STATISTICS AND COMPUTING , 2011RFree
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Revisiting the 4-Parameter Item Response Model: Bayesian Estimation and Application
Steven Andrew Culpepper , Psychometrika , 2016RFree
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Supervised Learning for Multi-Block Incomplete Data
Hadrien Lorenzo, Jérôme Saracco, Rodolphe Thiébaut , ArXiv , 2019RFree
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The taxlist package: Managing plant taxonomic lists in R
Miguel Alvarez, Federico tr. Luebert , Biodiversity data journal , 2018RFree
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GSODR: Global Summary Daily Weather Data in R
Adam H. Sparks, Tomislav Hengl, Andrew Nelson , J. Open Source Software , 2017RFree
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Generalized pairwise comparisons of prioritized outcomes in the two-sample problem
Marc Buyse , Statistics in medicine , 2010RFree
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DRomics: a turnkey tool to support the use of the dose-response framework for omics data in ecological risk assessment
Floriane Larras, Elise Billoir, +6 authors Marie-Laure Delignette-Muller , Environmental science & technology , 2018RFree
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A Bayesian methodology for systemic risk assessment in financial networks
Axel Gandy, Luitgard A. M. Veraart , Management Science , 2017RFree
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Performance evaluation of DNA copy number segmentation methods
Morgane Pierre-Jean, Guillem Rigaill, Pierre Neuvial , Briefings in Bioinformatics , 2015RFree
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pdfsearch: Search Tools for PDF Files
Brandon LeBeau , J. Open Source Software , 2018RFree
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Generalized blockmodeling of valued networks
Ales Ziberna , Social Networks , 2007RFree
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Overfitting Bayesian mixtures of factor analyzers with an unknown number of components
Panagiotis Papastamoulis , Computational Statistics & Data Analysis , 2018RFree
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ontologyX: a suite of R packages for working with ontological data
Daniel G Greene, Sylvia Richardson, Ernest Turro , Bioinformatics , 2017RFree
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paleofire: An R package to analyse sedimentary charcoal records from the Global Charcoal Database to reconstruct past biomass burning
Olivier Blarquez, Boris Vannière, +4 authors Patrick J. Bartlein , Computers & Geosciences , 2014RFree
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Manipulating and Summarizing Posterior Simulations Using Random Variable Objects
Jouni Kerman, Andrew Gelman , Statistics and Computing , 2007RFree
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SEQMINER: An R-Package to Facilitate the Functional Interpretation of Sequence-Based Associations
Xiaowei Zhan, Dajiang J. Liu , GENETIC EPIDEMIOLOGY , 2015RFree
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Uncertainty analysis using evidence theory – confronting level-1 and level-2 approaches with data availability and computational constraints
Philipp Limbourg, Etienne de Rocquigny , Rel. Eng. & Sys. Safety , 2010RFree
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simcausal R Package: Conducting Transparent and Reproducible Simulation Studies of Causal Effect Estimation with Complex Longitudinal Data
Oleg Sofrygin, Mark J. van der Laan, Romain S. Neugebauer , Journal of statistical software , 2017RFree
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A Mixture Model-based Approach to the Clustering of Microarray Expression Data
Geoffrey J. McLachlan, Richard Bean, David Peel , Bioinformatics , 2002RFree
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Faster ARMA maximum likelihood estimation
A. Ian McLeod, Ying Zhang , Computational Statistics & Data Analysis , 2008RFree
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DALEX: explainers for complex predictive models
Przemyslaw Biecek , ArXiv , 2018RFree
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R2GUESS: A Graphics Processing Unit-Based R Package for Bayesian Variable Selection Regression of Multivariate Responses
Benoit Liquet, Leonardo Bottolo, Gianluca Campanella, Sylvia Richardson, Marc Chadeau-Hyam , Journal of statistical software , 2016RFree
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Ridge estimation of the VAR(1) model and its time series chain graph from multivariate time-course omics data
Viktorian Miok, Saskia M. Wilting, Wessel N van Wieringen , Biometrical journal. Biometrische Zeitschrift , 2017RFree
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varrank: an R package for variable ranking based on mutual information with applications to observed systemic datasets
Gilles Kratzer, Reinhard Furrer , ArXiv , 2018RFree
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A Framework for Anchor Methods and an Iterative Forward Approach for DIF Detection
Julia Kopf, Achim Zeileis, Carolin Strobl , Applied psychological measurement , 2015RFree
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The visualFields package: A tool for analysis and visualization of visual fields
Iván Marín-Franch, William H Swanson , Journal of vision , 2013RFree
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Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis
Van Du T Tran, Sébastien Moretti, Alix Therese Coste, Sara Amorim-Vaz, Dominique Sanglard, Marco Pagni , Bioinformatics , 2018RFree
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beadplexr: Reproducible and automated analysis of multiplex bead assays
Ulrik Stervbo, Timm H. Westhoff, Nina Babel , PeerJ , 2018RFree
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Variance component score test for time-course gene set analysis of longitudinal RNA-seq data
Denis Agniel, Boris P. Hejblum , Biostatistics , 2016RFree
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VARSEDIG: an algorithm for morphometric characters selection and statistical validation in morphological taxonomy
Cástor Guisande, Richard P. Vari, +5 authors Patricia Pelayo-Villamil , Zootaxa , 2016RFree
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PSICA: decision trees for probabilistic subgroup identification with categorical treatments
Oleg Sysoev, Krzysztof Bartoszek, Eva-Charlotte Ekstrom, Katarina Ekholm Selling , Statistics in medicine , 2018RFree
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hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups
Mohammad H. Ferdosi, Brian P. Kinghorn, Julius van der Werf, Seung Hwan Lee, Cedric Gondro , BMC Bioinformatics , 2013RFree
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MplusAutomation: An R Package for Facilitating Large-Scale Latent Variable Analyses in Mplus
Michael N. Hallquist, Joshua F Wiley , Structural equation modeling : a… , 2018RFree
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Recovering Gene Interactions from Single-Cell Data Using Data Diffusion
David van Dijk, Roshan Sharma, Juozas Nainys, Kristina M Yim, Dana Pe’er , Cell , 2018RFree
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clustvarsel: A Package Implementing Variable Selection for Gaussian Model-Based Clustering in R
Luca Scrucca, Adrian E. Raftery , Journal of statistical software , 2014RFree
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hillR: taxonomic, functional, and phylogenetic diversity and similarity through Hill Numbers
Daijiang Li , J. Open Source Software , 2018RFree
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scrm: efficiently simulating long sequences using the approximated coalescent with recombination
Paul R. Staab, Sha Zhu, Dirk Metzler, Gerton Lunter , Bioinformatics , 2015RFree
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A Tidy Data Model for Natural Language Processing using cleanNLP
Taylor Arnold , ArXiv , 2017RFree
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Neyman-Pearson classification algorithms and NP receiver operating characteristics
X. T. Tong, Yang Feng, Jingyi Jessica Li , Science Advances , 2018RFree
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Maximin Projection Learning for Optimal Treatment Decision with Heterogeneous Individualized Treatment Effects
Chengchun Shi, Rui Song, Wenbin Lu, Bo Fu , Journal of the Royal Statistical Society. Series… , 2018RFree
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Model-based clustering with sparse covariance matrices
Michael Fop, Thomas Brendan Murphy, Luca Scrucca , Statistics and Computing , 2017RFree
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Visualizing alpha-helical peptides in R with helixvis
Raoul R. Wadhwa, Vigneshwar Subramanian, Regina Stevens-Truss , J. Open Source Software , 2018RFree
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Genome-Wide Regression and Prediction with the BGLR Statistical Package
Paulino Pastor Pérez, Gustavo de Los Campos , Genetics , 2014RFree
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MALDIrppa: quality control and robust analysis for mass spectrometry data
Javier PalareaAlbaladejo, Kevin McLean, Frank Wright, David George Emslie Smith Biomathematics and Statistics Scotland, JCMB, The King's Buildings, Peter Guthrie Tait Road, Edinburgh, UK, Proteomics Facility Services, Moredun Research Institute, Pentland Science Park, Bush Loan, Penicuik, Mid Lothian, UK, HeriotWatt University , BIOINFORMATICS , 2018RFree
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TDAstats: R pipeline for computing persistent homology in topological data analysis
Raoul R. Wadhwa, Drew F. K. Williamson, Andrew Dhawan, James G. Scott , J. Open Source Software , 2018RFree
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AMModels: An R package for storing models, data, and metadata to facilitate adaptive management
Therese M Donovan, Jonathan Katz , PloS one , 2018RFree
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Orthogonalizing EM: A design-based least squares algorithm
Shifeng Xiong, Bin Dai, Jared D Huling, Peter Z. G. Qian , Technometrics , 2016RFree
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Predictions of response to temperature are contingent on model choice and data quality
Etienne Low-Décarie, Tobias G Boatman, +4 authors Richard J Geider , Ecology and evolution , 2017RFree
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compboost: Modular Framework for Component-Wise Boosting
Daniel Schalk, Janek Thomas, Bernd Bischl , J. Open Source Software , 2018RFree
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Geographical detectors-based health risk assessment and its application in the neural tube defects study of the Heshun region, China
Jinfeng Wang, Xinhu Li, +4 authors Xiaoying Zheng , International Journal of Geographical Information… , 2010RFree
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Regression Models for Multivariate Count Data
Yiwen Zhang, Hua Zhou, Jin Zhou, Wei Sun , Journal of computational and graphical statistics… , 2017RFree
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On modeling animal movements using Brownian motion with measurement error
Vladimir Pozdnyakov, Thomas H. Meyer, Yu-Bo Wang, Jun Yan , Ecology , 2014RFree
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ungroup: An R package for efficient estimation of smooth distributions from coarsely binned data
Marius D. Pascariu, Maciej J. Danko, Jonas Schöley, Silvia Rizzi , J. Open Source Software , 2018RFree
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SAVER: gene expression recovery for single-cell RNA sequencing
Mo Huang, Jingshu Wang, +7 authors Nancy R. Zhang , Nature Methods , 2018RFree
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bayesPop: Probabilistic Population Projections
Hana Ševčíková, Adrian E. Raftery , Journal of statistical software , 2016RFree
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Testing noisy numerical data for monotonic association
Ulrich Bodenhofer, Martin Krone, Frank Klawonn , Inf. Sci. , 2013RFree
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The effects of disproportional load contributions on quantifying vegetated filter strip sediment trapping efficiencies
Heather Elise Gall, Daniel Clyde Schultz, +5 authors Paul H. Patterson , Stochastic Environmental Research and Risk… , 2018RFree
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Simultaneous model-based clustering and visualization in the Fisher discriminative subspace
Charles Bouveyron, Camille Brunet , Statistics and Computing , 2012RFree
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Quantitative analyses of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy
Volker J. Schmid, Marion Cremer, Thomas Cremer , Methods , 2017RFree
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weathercan: Download and format weather data from Environment and Climate Change Canada
Stefanie E. LaZerte, Sam Albers , J. Open Source Software , 2018RFree
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eixport: An R package to export emissions to atmospheric models
Sergio Ibarra-Espinosa, Daniel Schuch, Edmilson Dias de Freitas , J. Open Source Software , 2018RFree
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Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures
Amir Foroushani, Fiona S. L. Brinkman, David J. Lynn , PeerJ , 2013RFree
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