-
The drake R package: a pipeline toolkit for reproducibility and high-performance computing
William Michael Landau , J. Open Source Software , 2018RFree
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The discrete Laplace exponential family and estimation of Y-STR haplotype frequencies
Mikkel Meyer Andersen, Poul Svante Eriksen, Niels Morling , Journal of theoretical biology , 2013RFree
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The digitize package: extracting numerical data from scatterplots
Timothée Poisot , The R Journal , 2011RFree
-
The Degrees of Freedom of Partial Least Squares Regression
Nicole Krämer, Masashi Sugiyama , Journal of the American Statistical Association , 2010RFree
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The cost of growing large: costs of post-weaning growth on body mass senescence in a wild mammal
Frédéric Douhard, Jean-Michel Gaillard, Maryline Pellerin, Laurent Jacob, Jean-François Lemaître , OIKOS , 2017RFree
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The Cost of Grade Retention
Marco Manacorda , Review of Economics and Statistics , 2012MATLABFree
-
The chopthin algorithm for resampling
Axel Gandy, F. Din-Houn Lau , IEEE Transactions on Signal Processing , 2016RFree
-
The cg Package for Comparison of Groups
Bill Pikounis, John U. Oleynick , Journal of Statistical Software , 2013RFree
-
The biglasso Package: A Memory- and Computation-Efficient Solver for Lasso Model Fitting with Big Data in R
Yaohui Zeng, Patrick J Breheny , ArXiv e-prints , 2017RFree
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The betaboost package – a software tool for modelling bounded outcome variables in potentially high-dimensional epidemiological data
Andreas Mayr, Leonie Weinhold, Benjamin Hofner, Stephanie Titze, Olaf Gefeller, Matthias Schmid , International journal of epidemiology , 2018RFree
-
The benchden Package: Benchmark Densities for Nonparametric Density Estimation
Thoralf Mildenberger, Henrike Weinert , Journal of Statistical Software , 2012RFree
-
The ade4 Package: Implementing the Duality Diagram for Ecologists
Stéphane Dray, Anne-Béatrice Dufour , Journal of Statistical Software , 2007RFree
-
The ‘dnet’ approach promotes emerging research on cancer patient survival
Hai Fang, Julian Gough , GENOME MEDICINE , 2014RFree
-
tgp: An R Package for Bayesian Nonstationary, Semiparametric Nonlinear Regression and Design by Treed Gaussian Process Models
Robert B. Gramacy , Journal of Statistical Software , 2007RFree
-
tgcd: An R package for analyzing thermoluminescence glow curves
Jun Peng, Zhibao Dong, Fengqing Han , SoftwareX , 2016RFree
-
Text Mining Infrastructure in R
Ingo Feinerer, Kurt Hornik, David Meyer , Journal of Statistical Software , 2008RFree
-
texreg: Conversion of Statistical Model Output in R to \LaTeX and HTML Tables
Philip Leifeld , JOURNAL OF STATISTICAL SOFTWARE , 2013RFree
-
testthat: Get Started with Testing
Hadley Wickham , The R Journal , 2011RFree
-
Testing, Monitoring, and Dating Structural Changes in Exchange Rate Regimes
Achim Zeileis, Ajay Shah, Ila Patnaik , Computational Statistics & Data Analysis , 2010RFree
-
Testing noisy numerical data for monotonic association
Ulrich Bodenhofer, Martin Krone, Frank Klawonn , Inf. Sci. , 2013RFree
-
Testing Goodness-of-Fit with the Kernel Density Estimator: GoFKernel
José M. PavÃa , Journal of Statistical Software, Code Snippets , 2015RFree
-
Testing environmental and genetic effects in the presence of spatial autocorrelation
François Rousset, Jean-Baptiste Ferdy , Ecography , 2014RFree
-
tensorBF: an R package for Bayesian tensor factorization
Suleiman A. Khan, Muhammad Ammad-ud-din , bioRxiv , 2016RFree
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Temporal Process Regression
J. P. Fine, J. Yan, M. R. Kosorok University of WisconsinMadison , BIOMETRIKA , 2004RFree
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Temporal Exponential Random Graph Models with btergm: Estimation and Bootstrap Confidence Intervals
Philip Leifeld, Skyler J. Cranmer, Bruce A. Desmarais , Journal of Statistical Software , 2018RFree
-
Temporal and Spatial Independent Component Analysis for fMRI Data Sets Embedded in the AnalyzeFMRI R Package
Cécile Bordier, Michel Dojat, Pierre Lafaye de Micheaux , Journal of Statistical Software , 2011RFree
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teigen: An R Package for Model-Based Clustering and Classification via the Multivariate $t$ Distribution
Jeffrey L. Andrews, Jaymeson R. Wickins, Nicholas M. Boers, Paul D. McNicholas , JOURNAL OF STATISTICAL SOFTWARE , 2018RFree
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Technical Note: Downscaling RCM precipitation to the station scale using statistical transformations – a comparison of methods
L. Gudmundsson, , J. B. Bremnes, J. E. Haugen, T. EngenSkaugen , HYDROLOGY AND EARTH SYSTEM SCIENCES , 2012RFree
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TDAstats: R pipeline for computing persistent homology in topological data analysis
Raoul R. Wadhwa, Drew F. K. Williamson, Andrew Dhawan, James G. Scott , J. Open Source Software , 2018RFree
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tcR: an R package for T-cell receptor repertoire data analysis
Vadim I. Nazarov, Mikhail V. Pogorelyy, Ekaterina A. Komech, Ivan V. Zvyagin, Dmitry A. Bolotin , et al. , BMC BIOINFORMATICS , 2015RFree
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tclust: An R Package for a Trimming Approach to Cluster Analysis
Heinrich Fritz, Luis Angel GarcÃa-Escudero, AgustÃn Mayo-Ãscar , Journal of Statistical Software , 2012RFree
-
Taxonomic identification of environmental DNA with informatic sequence classification trees.
Shaun P. Wilkinson, Simon K. Davy, Michael Bunce, Michael Stat , bioRxiv , 2018RFree
-
taxize – taxonomic search and retrieval in R
Scott A. Chamberlain, Eduard Szöcs , F1000RESEARCH , 2013RFree
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Taxa: An R package implementing data standards and methods for taxonomic data.
Zachary S.L. Foster, Scott Chamberlain, Niklaus J. Grünwald , F1000RESEARCH , 2018RFree
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Systems Factorial Technology with R
Joseph W. Houpt, Leslie M. Blaha, John P. McIntire, Paul R. Havig, James T. Townsend , Behavior research methods , 2014RFree
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systemfit: A Package for Estimating Systems of Simultaneous Equations in R
Arne Henningsen, Jeff D. Hamann , Journal of Statistical Software , 2007RFree
-
synthpop: Bespoke Creation of Synthetic Data in R
Beata Nowok, Gillian M. Raab, Chris Dibben , Journal of Statistical Software , 2016RFree
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Synth: An R Package for Synthetic Control Methods in Comparative Case Studies
Alberto Abadie, Alexis Diamond, Jens Hainmueller , Journal of Statistical Software , 2011RFree
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SYNCSA – R tool for analysis of metacommunities based on functional traits and phylogeny of the community components
Vanderlei J. Debastiani, Valério D. Pillar , Bioinformatics , 2012RFree
-
synbreed: a framework for the analysis of genomic prediction data using R
Valentin Wimmer, Theresa Albrecht, Hans-Jürgen Auinger, Chris-Carolin Schön , Bioinformatics , 2012RFree
-
SWMPr: An R Package for Retrieving, Organizing, and Analyzing Environmental Data for Estuaries
Marcus W. Beck , {The R Journal , 2016RFree
-
survPresmooth: An R Package for Presmoothed Estimation in Survival Analysis
Ignacio López-de-Ullibarri, MarÃa Amalia Jácome , Journal of Statistical Software , 2013RFree
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Sur la variabilité de la fréquence des formes dans un corpus
Pierre Lafon , MOTS , 1980RFree
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Supramolecular Self-Assembly and Organization of Collagen at Solid/Liquid Interface: Effect of Spheroid- and Rod-Shaped TiO 2 Nanocrystals
Mathieu Beauvais, Thomas Degabriel, Nesrine Aissaoui, Vincent Dupres, Elodie Colaço , et al. , ADVANCED MATERIALS INTERFACES , 2019RFree
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Suppdata: Downloading Supplementary Data from Published Manuscripts
Will Pearse, Scott Chamberlain , J. Open Source Software , 2018RFree
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Supervised multiblock sparse multivariable analysis with application to multimodal brain imaging genetics
Atsushi Kawaguchi, Fumio Yamashita , Biostatistics , 2017RFree
-
Supervised Learning for Multi-Block Incomplete Data
Hadrien Lorenzo, Jérôme Saracco, Rodolphe Thiébaut , ArXiv , 2019RFree
-
Stylometry with R: a package for computational text analysis
Maciej Eder, Jan Rybicki, Mike Kestemont , R Journal , 2016RFree
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Structured Additive Regression Models: An R Interface to BayesX
Nikolaus Umlauf, Daniel G Adler, Thomas Kneib, Stefan Lang, Achim Zeileis , Journal of Statistical Software , 2015RFree
-
Structural Influence of gene networks on their inference: Analysis of C3NET
Gökmen Altay, Frank Emmert-Streib , Biology Direct , 2011RFree
-
Structural Breaks in Inflation Dynamics within the European Monetary Union
Thomas Windberger, Achim Zeileis , Eastern European Economics , 2014RFree
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structSSI: Simultaneous and Selective Inference for Grouped or Hierarchically Structured Data
Kris Sankaran, Susan P. Holmes , Journal of Statistical Software , 2014RFree
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strucchange: An R Package for Testing for Structural Change in Linear Regression Models
Achim Zeileis, Friedrich Leisch, Kurt Hornik, Christian Kleiber , Journal of Statistical Software , 2001RFree
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strataG: An R package for manipulating, summarizing and analysing population genetic data
Frederick I. Archer, Paula Adams, Brita B. Schneiders , Molecular ecology resources , 2017RFree
-
STR-validator: An open source platform for validation and process control
Oskar Hansson, Peter Gill, , Thore Egeland, , FORENSIC SCIENCE INTERNATIONAL-GENETICS , 2014RFree
-
stplanr: A Package for Transport Planning
Robin Lovelace, Richard B. Ellison , {The R Journal , 2019RFree
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Stochastic Newton Sampler: The R Package sns
Alireza S. Mahani, Asad Zadeh Hasan, Marshall Jiang, Mansour Taghavi Azar Sharabiani , Journal of Statistical Software, Code Snippets , 2015RFree
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StMoMo: An R Package for Stochastic Mortality Modeling
Andrés M. Villegas, Vladimir K. Kaishev, Pietro Millossovich , JOURNAL OF STATISTICAL SOFTWARE , 2018RFree
-
StereoMorph: an R package for the collection of 3D landmarks and curves using a stereo camera set-up
Aaron M. Olsen, Mark W. Westneat , METHODS IN ECOLOGY AND EVOLUTION , 2015RFree
-
Stepwise detection of recombination breakpoints in sequence alignments.
Jinko Graham, Brad McNeney, Françoise Seillier-Moiseiwitsch , BIOINFORMATICS , 2005RFree
-
stats 19: A package for working with open road crash data
R Lovelace, M Morgan, L Hama, M Padgham , arXiv: Computation , 2019RFree
-
statmod: probability calculations for the inverse Gaussian distribution
Göknur Giner, Gordon K. Smyth , R Journal , 2016RFree
-
Statistically robust methylation calling for whole-transcriptome bisulfite sequencing reveals distinct methylation patterns for mouse RNAs
Carine Legrand, Francesca Tuorto, +4 authors Frank Lyko , Genome research , 2017RFree
-
Statistical Parametric Maps for Functional MRI Experiments in R: The Package fmri
Karsten Tabelow, Jörg Polzehl , Journal of Statistical Software , 2011RFree
-
Statistical Methods for the Qualitative Assessment of Dynamic Models with Time Delay (R Package qualV)
Stefanie Jachner, K. Gerald van den Boogaart, Thomas Petzoldt , Journal of Statistical Software , 2007RFree
-
Statistical Inference for Partially Observed Markov Processes via the R Package pomp
Aaron A. King, Dao Nguyen, Edward L. Ionides , Journal of Statistical Software , 2015RFree
-
Statistical efficiency in distance sampling
Robert Graham Clark , PloS one , 2016RFree
-
Statistical Disclosure Control for Micro-Data Using the R Package sdcMicro
Matthias Templ, Alexander Kowarik, Bernhard Meindl , JOURNAL OF STATISTICAL SOFTWARE , 2015RFree
-
Statistical Computing in Functional Data Analysis: The R Package fda.usc
Manuel FebreroBande, Manuel Oviedo de la Fuente , JOURNAL OF STATISTICAL SOFTWARE , 2012RFree
-
Statistical colocalisation of monocyte gene expression and genetic risk variants for type 1 diabetes.
Chris Wallace, Maxime Rotival, Jason D Cooper, et al. , HUMAN MOLECULAR GENETICS , 2012RFree
-
Statistical analysis of histopathological endpoints
John William Green, Timothy A. Springer, Amy N Saulnier, Joe Swintek , Environmental toxicology and chemistry , 2014RFree
-
StatDataML: An XML format for statistical data
David Meyer, Friedrich Leisch, Torsten Hothorn, Kurt Hornik , Journal of Computational Statistics , 2004RFree
-
Standard anatomical and visual space for the mouse retina: computational reconstruction and transformation of flattened retinae with the Retistruct package
David C. Sterratt, Daniel Lyngholm, David J. Willshaw, Ian D. Thompson , PLoS Computational Biology , 2013RFree
-
stampr: Spatial-Temporal Analysis of Moving Polygons in R
Jed Long, Colin Robertson, Trisalyn Nelson , JOURNAL OF STATISTICAL SOFTWARE , 2018RFree
-
StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations
Luke W Pembleton, Noel O. I. Cogan, John Wilfrid Forster , Molecular ecology resources , 2013RFree
-
Stable estimation of a covariance matrix guided by nuclear norm penalties
Eric C. Chi, Kenneth Lange , Computational Statistics & Data Analysis , 2014RFree
-
Stable computation of maximum likelihood estimates in identity link Poisson regression
Ian C. Marschner , Journal of Computational and Graphical Statistics , 2010RFree
-
SSDM: an R package to predict distribution of species richness and endemism based on stacked species distribution models
Sylvain Schmitt, Robin Pouteau, Dimitri Justeau, Florian de Boissieu, Philippe Birnbaum , METHODS IN ECOLOGY AND EVOLUTION , 2017RFree
-
ss3sim: An R package for fisheries stock assessment simulation with Stock Synthesis
Sean C Anderson, Cole C Monnahan, Kelli F. Johnson, Kotaro Ono, Juan L. Valero , PloS one , 2014RFree
-
spTimer: Spatio-Temporal Bayesian Modeling Using R
K Shuvo Bakar, Sujit Kumar Sahu , Journal of Statistical Software , 2015RFree
-
spTest: An R Package Implementing Nonparametric Tests of Isotropy
Zachary D Weller , Journal of Statistical Software , 2015RFree
-
SPODT: An R Package to Perform Spatial Partitioning
Jean Gaudart, Nathalie Grafféo, +4 authors Roch Giorgi , Journal of Statistical Software , 2015RFree
-
spMC: an R-package for 3D lithological reconstructions based on spatial Markov chains
Luca Sartore, Paolo Fabbri, Carlo Gaetan , Computers & Geosciences , 2016RFree
-
splm: Spatial Panel Data Models in R
Giovanni Millo, Gianfranco Piras , Journal of Statistical Software , 2012RFree
-
Spind: a package for computing spatially corrected accuracy measures.
Gudrun Carl, Ingolf Kühn , ECOGRAPHY , 2017RFree
-
spikeSlabGAM: Bayesian Variable Selection, Model Choice and Regularization for Generalized Additive Mixed Models in R
Fabian Scheipl , Journal of Statistical Software , 2011RFree
-
Spike and slab variable selection: frequentist and Bayesian strategies
Hemant Ishwaran, J. Sunil Rao , Ann. Statist. , 2005RFree
-
SPIDER: an R package for the analysis of species identity and evolution, with particular reference to DNA barcoding
Samuel D. J. Brown, Rupert A Collins, +4 authors Robert Hamish Cruickshank , Molecular ecology resources , 2012RFree
-
sphet: Spatial Models with Heteroskedastic Innovations in R
Gianfranco Piras , Journal of Statistical Software , 2010RFree
-
Spherical $k$-Means Clustering
Kurt Hornik, Ingo Feinerer, Martin Kober , JOURNAL OF STATISTICAL SOFTWARE , 2012RFree
-
Speeding up ecological and evolutionary computations in R; Essentials of high performance computing for biologists
Marco D. Visser, Sean M. McMahon, Cory Merow, Philip M. Dixon, Sydne Record, Eelke Jongejans , PLoS Computational Biology , 2015RFree
-
SPEDInstabR: An algorithm based on a fluctuation index for selecting predictors in species distribution modeling
Cástor Guisande, Emilio García Roselló, +4 authors Jorge M. Lobo , Ecological Informatics , 2017RFree
-
SPECIES: An R Package for Species Richness Estimation
Ji-Ping Wang , Journal of Statistical Software , 2011RFree
-
spBayesSurv: Fitting Bayesian Spatial Survival Models Using R
Haiming Zhou, Timothy Hanson, Jiajia Zhang , Journal of Statistical Software , 2017RFree
-
spBayes: An R Package for Univariate and Multivariate Hierarchical Point-Referenced Spatial Models
Andrew O. Finley, Sudipto Banerjee, Bradley P. Carlin , Journal of statistical software , 2007RFree
-
spatsurv: An R Package for Bayesian Inference with Spatial Survival Models
Benjamin M. Taylor, Barry S. Rowlingson , Journal of Statistical Software , 2017RFree
-
Spatio-temporal interpolation of daily temperatures for global land areas at 1 km resolution
Milan Kilibarda, Tomislav Hengl, +4 authors Branislav Bajat , J. Geophys. Res. Atmos. , 2014RFree
-
Spatio-Temporal Areal Unit Modeling in R with Conditional Autoregressive Priors Using the CARBayesST Package
Duncan Lee, Alastair Rushworth, Gary Napier , Journal of Statistical Software , 2018RFree
-
Spatial heterogeneity in composite indicator: a methodological proposal
Elisa Fusco, Francesco Vidoli, Biresh K. Sahoo , Omega , 2017RFree
-
Spatial Data Analysis with R-INLA with Some Extensions
Roger Bivand, Virgilio Gómez-Rubio, Håvard Rue , Journal of Statistical Software , 2015RFree
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