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Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis
Van Du T Tran, Sébastien Moretti, Alix Therese Coste, Sara Amorim-Vaz, Dominique Sanglard, Marco Pagni , Bioinformatics , 2018RFree
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The visualFields package: A tool for analysis and visualization of visual fields
Iván Marín-Franch, William H Swanson , Journal of vision , 2013RFree
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R2GUESS: A Graphics Processing Unit-Based R Package for Bayesian Variable Selection Regression of Multivariate Responses
Benoit Liquet, Leonardo Bottolo, Gianluca Campanella, Sylvia Richardson, Marc Chadeau-Hyam , Journal of statistical software , 2016RFree
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SEQMINER: An R-Package to Facilitate the Functional Interpretation of Sequence-Based Associations
Xiaowei Zhan, Dajiang J. Liu , GENETIC EPIDEMIOLOGY , 2015RFree
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DRomics: a turnkey tool to support the use of the dose-response framework for omics data in ecological risk assessment
Floriane Larras, Elise Billoir, +6 authors Marie-Laure Delignette-Muller , Environmental science & technology , 2018RFree
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phylosignal: an R package to measure, test, and explore the phylogenetic signal
François Keck, Frédéric Rimet, Agnès Bouchez, Alain Franc , Ecology and evolution , 2016RFree
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An introduction to principal surrogate evaluation with the pseval package
Michael C. Sachs, Erin E Gabriel , The R journal , 2016RFree
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KnowBR: An application to map the geographical variation of survey effort and identify well-surveyed areas from biodiversity databases
Jorge M. Lobo, Joaquín Hortal, José Luís Yela, Andrés Millán, David SánchezFernández , et al. , ECOLOGICAL INDICATORS , 2018RFree
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Bayesian and parsimony approaches reconstruct informative trees from simulated morphological datasets
Martin R Smith , Biology letters , 2019RFree
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MCMCvis: Tools to visualize, manipulate, and summarize MCMC output
Casey Youngflesh , J. Open Source Software , 2018RFree
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pez: Phylogenetics for the Environmental Sciences
William D. Pearse, Marc W. Cadotte, +4 authors Matthew R. Helmus , Bioinformatics , 2015RFree
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Near real time weather and ocean model data access with rNOMADS
D. C. Bowman, J. M. Lees , Computers & Geosciences , 2015RFree
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Proportional hazards model with random effects
Florin Vaida, Run-zhang Xu , Statistics in medicine , 2000RFree
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The discrete Laplace exponential family and estimation of Y-STR haplotype frequencies
Mikkel Meyer Andersen, Poul Svante Eriksen, Niels Morling , Journal of theoretical biology , 2013RFree
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Practical Bayesian model evaluation using leave-one-out cross-validation and WAIC
Aki Vehtari, Andrew Gelman, Jonah Gabry , Statistics and Computing , 2017RFree
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Estimation of quantile mixtures via L-moments and trimmed L-moments
Juha Karvanen , Computational Statistics & Data Analysis , 2006RFree
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MM2S: personalized diagnosis of medulloblastoma patients and model systems
Deena M. A. Gendoo, Benjamin Haibe-Kains , Source Code for Biology and Medicine , 2016RFree
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Radiomic Features Are Superior to Conventional Quantitative Computed Tomographic Metrics to Identify Coronary Plaques With Napkin-Ring Sign
Márton Kolossváry, Júlia Karády, +4 authors Pál Maurovich-Horvat , Circulation. Cardiovascular imaging , 2017RFree
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Unravelling changing interspecific interactions across environmental gradients using Markov random fields
Nicholas J Clark, Konstans Wells, Oscar Lindberg , Ecology , 2018RFree
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eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models
Julián Candia, John S. Tsang , BMC Bioinformatics , 2019RFree
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Clustering trees: a visualization for evaluating clusterings at multiple resolutions
Luke Zappia, Alicia Oshlack , GigaScience , 2018RFree
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aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data
George Rosenberger, Christina Ludwig, Hannes L. Röst, Ruedi Aebersold, Lars Malmström , Bioinformatics , 2014RFree
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Classer, discriminer et visualiser des séquences d’événements
Matthias Studer, Nicolas S. Müller, Gilbert Ritschard, Alexis Gabadinho , EGC , 2010RFree
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Similarity-First Search: A New Algorithm with Application to Robinsonian Matrix Recognition
Monique Laurent, Matteo Seminaroti , SIAM J. Discrete Math. , 2016RFree
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Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data
F. Favero, Tushar Kant Joshi, +5 authors Aron Charles Eklund , Annals of oncology : official journal of the… , 2015RFree
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PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R
Bastian Pfeifer, Ulrich Wittelsbürger, Sebastián Ramos-Onsins, Martin J. Lercher , Molecular biology and evolution , 2014RFree
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Statistical Disclosure Control for Micro-Data Using the R Package sdcMicro
Matthias Templ, Alexander Kowarik, Bernhard Meindl , JOURNAL OF STATISTICAL SOFTWARE , 2015RFree
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Multivariable geostatistics in S: the gstat package
Edzer J. Pebesma , Computers & Geosciences , 2004RFree
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Gene hunting with hidden Markov model knockoffs
Matteo Sesia, Chiara Sabatti, Emmanuel J. Candès , BIOMETRIKA , 2019RFree
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Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology
Elior Rahmani, Regev Schweiger, Brooke Rhead, Lindsey A. Criswell, Lisa F. Barcellos , et al. , BIORXIV , 2018RFree
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cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in cancer
Mahmoud Ahmed, Deok Ryong Kim , PeerJ , 2018RFree
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Empirical Transition Matrix of Multi-State Models: The etm Package
Arthur Allignol, Martin Schumacher, Jan Beyersmann , JOURNAL OF STATISTICAL SOFTWARE , 2011RFree
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metaSEM: An R Package for Meta-Analysis using Structural Equation Modeling
Mike W.-L. Cheung , Front. Psychol. , 2014RFree
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TSrepr R package: Time Series Representations
Peter Laurinec , J. Open Source Software , 2018RFree
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SCRIP: Successive Convex Optimization Methods for Risk Parity Portfolio Design
Yiyong Feng, Daniel Pérez Palomar , IEEE Transactions on Signal Processing , 2015RFree
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Sparse Portfolios for High-Dimensional Financial Index Tracking
Konstantinos Benidis, Yiyong Feng, Daniel Pérez Palomar , IEEE Transactions on Signal Processing , 2018RFree
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Supervised multiblock sparse multivariable analysis with application to multimodal brain imaging genetics
Atsushi Kawaguchi, Fumio Yamashita , Biostatistics , 2017RFree
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Using Introspection to Collect Provenance in R
Barbara Lerner, Emery R. Boose, Luis Perez , Informatics , 2018RFree
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Numero: a statistical framework to define multivariable subgroups in complex population-based datasets
Song Gao, Stefan Mutter, Aaron E Casey, Ville-Petteri Mäkinen , International journal of epidemiology , 2018RFree
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Quantile regression neural networks: implementation in R and application to precipitation downscaling
Alex J. Cannon , Computers & Geosciences , 2011RFree
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ergm: A Package to Fit, Simulate and Diagnose Exponential-Family Models for Networks
David R. Hunter, Mark Handcock, Carter T. Butts, Steven Michael Goodreau, Martina Morris , Journal of statistical software , 2008RFree
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BGData – A Suite of R Packages for Genomic Analysis with Big Data
Alexander Grueneberg, Gustavo de los Campos , G3 , 2019RFree
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The Induced Smoothed lasso: A practical framework for hypothesis testing in high dimensional regression
Giovanna Cilluffo, Gianluca Sottile, Stefania La Grutta, Vito M R Muggeo , Statistical methods in medical research , 2019RFree
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filesstrings: An R package for file and string manipulation
Rory Nolan, Sergi Padilla-Parra , J. Open Source Software , 2017RFree
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RProtoBuf: Efficient Cross-Language Data Serialization in R
Dirk Eddelbuettel, Murray Stokely, Jeroen Ooms , ArXiv , 2014RFree
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Improving epidemiologic data analyses through multivariate regression modelling
Fraser Iain Lewis, Michael P Ward , Emerging Themes in Epidemiology , 2013RFree
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On the visualization, verification and recalibration of ternary probabilistic forecasts
Tim E. Jupp, Rachel Lowe, Caio Augusto Dos Santos Coelho, David B. Stephenson , Philosophical transactions. Series A… , 2012RFree
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Visualizing balances of compositional data: A new alternative to balance dendrograms
Thomas P. Quinn , F1000Research , 2018RFree
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RcppArmadillo: Accelerating R with high-performance C++ linear algebra
Dirk Eddelbuettel, Conrad Sanderson , Computational Statistics & Data Analysis , 2014RFree
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partykit: A Modular Toolkit for Recursive Partytioning in R
Torsten Hothorn, Achim Zeileis , J. Mach. Learn. Res. , 2015RFree
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Should we stop looking for a better scoring algorithm for handling Implicit Association Test data? Test of the role of errors, extreme latencies treatment, scoring formula, and practice trials on reliability and validity
Juliette Richetin, Giulio Costantini, Marco Perugini, Felix D. Schönbrodt , PLOS ONE , 2015RFree
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quanteda: An R package for the quantitative analysis of textual data
Kenneth Benoit, Kohei Watanabe, +4 authors Akitaka Matsuo , J. Open Source Software , 2018RFree
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AGHmatrix: R Package to Construct Relationship Matrices for Autotetraploid and Diploid Species: A Blueberry Example
Rodrigo R. Amadeu, Catherine Cellon, James W. Olmstead, Antonio Augusto Franco Garcia, Márcio F. R. Resende, Patrício Rodrigo Montecinos Muñoz , The plant genome , 2016RFree
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Genotyping Polyploids from Messy Sequencing Data
David Gerard, Luis Felipe Ventorim Ferrão, Antonio Augusto Franco Garcia, Matthew Stephens , Genetics , 2018RFree
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OpenML: An R Package to Connect to the Machine Learning Platform OpenML
Giuseppe Casalicchio, Jakob Bossek, Michel Lang, Dominik Kirchhoff, Pascal Kerschke , et al. , COMPUTATIONAL STATISTICS , 2019RFree
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Optimal characterization of thermal microbial inactivation simulating non-isothermal processes
Alberto Garre, Gerardo A. González-Tejedor, Jose Lucas Peñalver-Soto, Pablo Sanz Fernández, Jose A. Egea , Food research international , 2018RFree
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Simulating Models of Issue Voting
Stuart Elaine Macdonald, George Rabinowitz, Ola Listhaug , POLITICAL ANALYSIS , 2007MATLABFree
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cjoint: Causal Inference in Conjoint Analysis: Understanding Multi-Dimensional Choices via Stated Preference Experiments
Jens Hainmueller, Daniel J. Hopkins, Teppei Yamamoto , POLITICAL ANALYSIS , 2014RFree
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Taxa: An R package implementing data standards and methods for taxonomic data.
Zachary S.L. Foster, Scott Chamberlain, Niklaus J. Grünwald , F1000RESEARCH , 2018RFree
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NetworkToolbox: Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis in R
Alexander P. Christensen , The R Journal , 2018RFree
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JASPAR 2013: An extensively expanded and updated open-access database of transcription factor binding profiles
Anthony Mathelier, Xiaobei Zhao, Allen W. Zhang, François Parcy, Rebecca WorsleyHunt , et al. , NUCLEIC ACIDS RESEARCH , 2014RFree
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Compost amendments in agricultural ecosystems: confirmatory path analysis to clarify the effects on soil chemical and biological properties.
A. Bellino, D. Baldantoni, F. De Nicola, P. Iovieno, M. Zaccardelli, A. Alfani , THE JOURNAL OF AGRICULTURAL SCIENCE , 2015RFree
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Variable Selection for Clustering and Classification
Jeffrey L. Andrews, Paul D. McNicholas , JOURNAL OF CLASSIFICATION , 2014RFree
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Models of soil organic matter decomposition: the SoilR package, version 1.0
C. A. Sierra, M. Müller, S. E. Trumbore , GEOSCIENTIFIC MODEL DEVELOPMENT , 2012RFree
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phtt: Panel Data Analysis with Heterogeneous Time Trends
Oualid Bada, Dominik Liebl , Journal of Statistical Software , 2014RFree
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A note on inference of trait associations with SNP haplotypes and other attributes in generalized linear models.
Kelly Burkett, Brad McNeney, Jinko Graham , HUMAN HEREDITY , 2004RFree
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An Improved Evaluation of Kolmogorov’s Distribution
Luis Carvalho , Journal of Statistical Software , 2015RFree
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Improved prediction of RNA tertiary structure with insights into native state dynamics.
John Paul Bida, , L. James Maher , RNA , 2012RFree
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diverse: an R Package to Measure Diversity in Complex Systems
Miguel R. Guevara, Dominik Hartmann, Marcelo Mendoza , R JOURNAL , 2016RFree
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eco: R Package for Ecological Inference in 2 x 2 Tables
Kosuke Imai, Ying Lu, Aaron Strauss , Journal of Statistical Software , 2011RFree
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smoof: Single- and Multi-Objective Optimization Test Functions
Jakob Bossek , R JOURNAL , 2017RFree
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A spatio-dynamic model for assessing frost risk in south-eastern Australia
K. Shuvo Bakar, Philip Kokic, , Huidong Jin, , JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS , 2015RFree
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A flexible AFT model for misclassified clustered interval-censored data.
María José García-Zattera, Alejandro Falla Jara, Arnost Komárek , Biometrics , 2016RFree
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Generalized Simulated Annealing for Efficient Global Optimization: the GenSA Package for R.
Yang Xiang, Sylvain Gubian, Brian Suomela, Julia Hoeng , R JOURNAL , 2013RFree
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EMMIXcskew: An R Package for the Fitting of a Mixture of Canonical Fundamental Skew $t$-Distributions
Sharon X. Lee, Geoffrey J. McLachlan , ARXIV: COMPUTATION , 2015RFree
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ads Package for R: A Fast Unbiased Implementation of the $K$-function Family for Studying Spatial Point Patterns in Irregular-Shaped Sampling Windows
Raphaël Pélissier, François Goreaud , JOURNAL OF STATISTICAL SOFTWARE , 2015RFree
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water : Tools and Functions to Estimate Actual Evapotranspiration Using Land Surface Energy Balance Models in R
Federico Olmedo Guillermo, Samuel Ortega-Farías, Daniel de la Fuente-Sáiz, David Fonseca Luego, Fernando Fuentes-Peñailillo , R JOURNAL , 2016RFree
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asympTest: a simple R package for performing classical parametric statistical tests and confidence intervals in large samples
J.F. Coeurjolly, R. Drouilhet, P. Lafaye de Micheaux, J.F. Robineau , R JOURNAL , 2009RFree
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Peptides: A Package for Data Mining of Antimicrobial Peptides
D. Osorio, Paola Rondón-Villarreal, Rodrigo Gonzalo Torres , R JOURNAL , 2015RFree
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pegas: an R package for population genetics with an integrated–modular approach
Emmanuel Paradis , Bioinformatics , 2010RFree
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eRah: a computational tool integrating spectral deconvolution and alignment with quantification and identification of metabolites in GC-MS-based metabolomics
Xavier Domingo-Almenara, Jesús Brezmes, Maria Vinaixa, Sara Samino, Noelia Ramirez, Marta Ramon-Krauel, Carles Lerin, Marta Díaz, Lourdes Ibáñez, Xavier Correig, Alexandre Perera-Lluna, Oscar Yanes , Analytical chemistry , 2016RFree
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Equivalence tests: A practical primer for t-tests, correlations, and meta-analyses
D Daniël Lakens , SOCIAL PSYCHOLOGICAL AND PERSONALITY SCIENCE , 2017RFree
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Correlation Trait Loci CTL mapping: phenotype network inference subject to genotype
Danny Arends, Yang Li, Gudrun A. Brockmann, Ritsert C. Jansen, Robert W. Williams , Pjotr Prins , The Journal of Open Source Software , 2016RFree
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Modelling, simulation and inference for multivariate time series of counts using trawl processes
Almut E.D. Veraart , JOURNAL OF MULTIVARIATE ANALYSIS , 2019RFree
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Recreational mathematics with R: introducing the ‘magic’ package.
Robin K. S. Hankin , R News , 2005RFree
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boral: Bayesian Ordination and Regression Analysis of Multivariate Abundance Data in R.
Francis K.C. Hui , METHODS IN ECOLOGY AND EVOLUTION , 2016RFree
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Taxonomic identification of environmental DNA with informatic sequence classification trees.
Shaun P. Wilkinson, Simon K. Davy, Michael Bunce, Michael Stat , bioRxiv , 2018RFree
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Analysis of Archaeological Phases using the CRAN Package ‘ArchaeoPhases’
Anne Philippe, Marie-Anne Vibet , METHODS IN ENZYMOLOGY , 1997RFree
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Resistor networks in R: introducing the ‘ResistorArray’ package
R.K.S. Hankin , R News , 2006RFree
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NLMR and landscapetools: An integrated environment for simulating and modifying neutral landscape models in R
Marco Sciaini, Matthias Fritsch, Cedric Scherer, Craig Eric Simpkins , BIORXIV , 2018RFree
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A model-based approach to characterize individual inbreeding at both global and local genomic scales.
Tom Druet, Mathieu Gautier , Molecular ecology , 2017RFree
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Evaluating the knowledge base and status of commercially exploited marine species with the RAM Legacy Stock Assessment Database.
Daniel Ricard, Cóilı́n Minto, Olaf P Jensen, Julia K Baum , FISH AND FISHERIES , 2012RFree
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babette: BEAUti 2, BEAST 2 and Tracer for R
Richel J.C. Bilderbeek, Rampal S. Etienne Groningen , BIORXIV , 2018RFree
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Quantifying statistical uncertainty in the attribution of human influence on severe weather.
Christopher J. Paciorek, D'aith'i A. Stone, Michael F. Wehner , Weather and Climate Extremes , 2017RFree
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Scalable visualisation methods for modern Generalized Additive Models.
Matteo Fasiolo, Raphaël Nedellec, Yannig Goude, Simon N. Wood , ARXIV: METHODOLOGY , 2018RFree
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Supramolecular Self-Assembly and Organization of Collagen at Solid/Liquid Interface: Effect of Spheroid- and Rod-Shaped TiO 2 Nanocrystals
Mathieu Beauvais, Thomas Degabriel, Nesrine Aissaoui, Vincent Dupres, Elodie Colaço , et al. , ADVANCED MATERIALS INTERFACES , 2019RFree
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R package imputeTestbench to Compare Imputation Methods for Univarite Time Series
Marcus W. Beck, Neeraj Bokde, Gualberto AsencioCortés, Kishore Kulat , R JOURNAL , 2018RFree
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Bayesian random-effects meta-analysis using the bayesmeta R~package
Christian Röver , ARXIV: COMPUTATION , 2017RFree
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The management of vegetation classifications with fuzzy clustering
Miquel de Cáceres, Xavier Font, Francesc Oliva , Journal of Vegetation Science , 2010RFree
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RNentropy: an entropy-based tool for the detection of significant variation of gene expression across multiple RNA-Seq experiments
Federico Zambelli, Francesca Mastropasqua, Ernesto Picardi, Anna Maria D’Erchia, Graziano Pesole, Giulio Pavesi , Nucleic acids research , 2018RFree
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