Connecting single-stock assessment models through correlated survival

View Researcher's Other Codes

Disclaimer: The provided code links for this paper are external links. Science Nest has no responsibility for the accuracy, legality or content of these links. Also, by downloading this code(s), you agree to comply with the terms of use as set out by the author(s) of the code(s).

Please contact us in case of a broken link from here

Authors Christoffer Moesgaard Albertsen, Anders Nielsen, Uffe Høgsbro Thygesen
Journal/Conference Name ICES Journal of Marine Science
Paper Category
Paper Abstract Fisheries management is mainly conducted via single-stock assessment models assuming that fish stocks do not interact, except through assumed natural mortalities. Currently, the main alternative is complex ecosystem models which require extensive data, are difficult to calibrate, and have long run times. We propose a simple alternative. In three case studies each with two stocks, we improve the single-stock models, as measured by Akaike information criterion, by adding correlation in the cohort survival. To limit the number of parameters, the correlations are parameterized through the corresponding partial correlations. We consider six models where the partial correlation matrix between stocks follows a band structure ranging from independent assessments to complex correlation structures. Further, a simulation study illustrates the importance of handling correlated data sufficiently by investigating the coverage of confidence intervals for estimated fishing mortality. The results presented will allow managers to evaluate stock statuses based on a more accurate evaluation of model output uncertainty. The methods are directly implementable for stocks with an analytical assessment and do not require any new data sources.
Date of publication 2017
Code Programming Language R
Comment

Copyright Researcher 2022