Modelling isoscapes using mixed models

View Researcher's Other Codes

Disclaimer: The provided code links for this paper are external links. Science Nest has no responsibility for the accuracy, legality or content of these links. Also, by downloading this code(s), you agree to comply with the terms of use as set out by the author(s) of the code(s).

Authors Alexandre Courtiol, François Rousset
Journal/Conference Name bioRxiv
Paper Category
Paper Abstract Isoscapes are maps depicting the continuous spatial (and sometimes temporal) variation in isotope composition. They have various applications ranging from the study of isotope circulation in the main earth systems to the determination of the provenance of migratory animals. Isoscapes can be produced from the fit of statistical models to observations originating from a set of discrete locations. Mixed models are powerful tools for drawing inferences from correlated data. While they are widely used to study non-spatial variation, they are often overlooked in spatial analyses. In particular, they have not been used to study the spatial variation of isotope composition. Here, we introduce this statistical framework and illustrate the methodology by building isoscapes of the isotope composition of hydrogen for precipitation water in Europe. For this example, the approach based on mixed models presents a higher predictive power than a widespread alternative approach. We discuss other advantages offered by mixed models including: the ability to model the residual variance in isotope composition, the quantification of prediction uncertainty, and the simplicity of model comparison and selection using an adequate information criterion: the conditional AIC (cAIC). We provide all source code required for the replication of the results of this paper as a small R package to foster a transparent comparison between alternative frameworks used to model isoscapes.
Date of publication 2017
Code Programming Language R

Copyright Researcher 2021